BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919623
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08750.1 | Symbols: | Peptidase C13 family | chr1:2801067-2... 1757 0.0
> AT1G08750.1 | Symbols: | Peptidase C13 family | chr1:2801067-2804537
FORWARD LENGTH=1528
Length=1528
Score = 1757 bits (951), Expect = 0.0
Identities = 1114/1189 (94%), Gaps = 26/1189 (2%)
Strand=Plus/Plus
Query 4 CAGATAATCTTCCTAAAAATGAAGATTCTTCTTATACTCGGAATGCTTCTCTGCTACTCC 63
||||| ||||||||||||||||||| |||||| ||||| ||||||| | ||||||||
Sbjct 199 CAGATTATCTTCCTAAAAATGAAGA---TTCTTACACTCGTAATGCTTTTATGCTACTCG 255
Query 64 TTCGTCTCTTCTTCCGGAGATACGACTATTCACACGAACAATTGGGCTGTTTTGGTCTGC 123
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 256 TTCGTCTCTTCTACCGGAGATACGACTATCCACACAAACAATTGGGCTGTTTTGGTCTGC 315
Query 124 ACTTCTCGCTTCTGGTTTAACTACCGGCACATGGCCAACACTCTGTCCCTGTATAGGACA 183
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 316 ACTTCTCGCTTCTGGTTTAACTACCGGCACATGGCCAATACTCTGTCCCTCTATAGGACA 375
Query 184 GTCAAGAGACTTGGAATACCAGATGAGAGGATTATTCTAATGCTGGCTGATGATATGGCC 243
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 376 GTCAAGAGACTTGGAATACCAGATGAGAGGATCATTCTTATGCTGGCTGATGATATGGCC 435
Query 244 TGTAATGCTAGAAATGAATATCCTGCTCAAGTTTTTAACAATGAAAACCACAAACTTAAC 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 436 TGTAATGCTAGAAATGAATATCCTGCTCAAGTTTTCAACAATGAAAACCACAAACTTAAC 495
Query 304 CTGTACGGAGATAACGTTGAGGTAGATTATCGTGGATATGAGGTAACAGTTGAAAATTTC 363
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTCTATGGAGATAACGTTGAGGTAGATTATCGTGGATATGAGGTAACAGTTGAAAATTTC 555
Query 364 TTACGGGTTTTGACTGGGCGTCATGAGAATGCTGTTCCAAGGTCAAAGCGTCTCCTCAGT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTACGGGTTTTGACTGGGCGTCATGAGAATGCTGTTCCAAGGTCAAAGCGTCTCCTCAGT 615
Query 424 GATGAGGGTAGCCATATTCTACTGTACATGACTGGGCATGGAGGTGATGAATTTCTAAAG 483
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 616 GATGAGGGTAGCCATATACTACTGTACATGACTGGGCATGGAGGTGATGAATTTTTGAAG 675
Query 484 TTTCAAGATGCAGAAGAACTCCAGAGCCACGATTTGGCAGATGCTGTAAAACAAATGAAA 543
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 676 TTTCAAGATGCAGAAGAACTCCAGAGTCACGATTTAGCAGATGCTGTAAAACAAATGAAA 735
Query 544 GAGAAGCGTAGATTCAAGGAGCTGATGATAATGGTTGATACTTGCCAAGCTGCCACTCTC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GAGAAGCGTAGATTCAAGGAGCTGATGATAATGGTTGATACTTGCCAAGCTGCCACTCTC 795
Query 604 TTTAATCAGCTTCAATCTCCTGGTGTTTTGGCTATTGGTAGCAGTCTAAAAGGCGAGAAC 663
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 796 TTTAATCAGCTTCAATCTCCTGGTGTTTTGGCTATTGGTAGCAGTCTAAAAGGAGAGAAC 855
Query 664 TCATATTCCCATCACCTTGATTCAGATATTGGTGTTTCTGTTGTAGATCGGTTTACATAT 723
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 856 TCATATTCCCATCACCTGGATTCAGATATTGGTGTATCTGTTGTAGATCGGTTTACATAT 915
Query 724 TACACTCTTGCATTTTTTGAGAGGCTCAATATCTATGACAATGCTTCACTTAACAGTTTA 783
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 916 TACACTCTTGCATTCTTTGAGAGGCTCAATATATATGACAATGCATCACTTAACAGTTTA 975
Query 784 TTTAGGTCCTACGATCCGAGACTGCTAATGTCTACTGCCTACTACCGGACTGATCTTTAC 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TTTAGGTCCTACGATCCGAGACTGCTAATGTCTACTGCCTACTACCGGACTGATCTTTAC 1035
Query 844 CAACCACATCTGGTGGAGGTACCGGTCACAAATTTCTTCGGTTCAGTTATGGAGACCATT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CAACCACATCTGGTGGAGGTACCGGTCACAAATTTCTTCGGTTCAGTTATGGAGACCATT 1095
Query 904 CATACTGATTCAGCTTACAAAGCCTTCTCAAGTAAAATCTCC-AATAGTAAGAGCAATCC 962
||||||||||||||||||||||| |||||||||||||||||| || || |||| |||| |
Sbjct 1096 CATACTGATTCAGCTTACAAAGCTTTCTCAAGTAAAATCTCCGAA-AGAAAGATCAATTC 1154
Query 963 CGAGATGCCACTCAATCAAGTTTCCGAGCACGAT------G-----C---A-AA--CAT- 1004
||||||||| |||||||| ||||||| |||||| | | | || ||
Sbjct 1155 TGAGATGCCATTCAATCAACTTTCCGAACACGATCTTAAAGAAGAGCTTGAGAATACAAA 1214
Query 1005 C---CCAAATGATGAGTTGAAAACTGAGAAGCAAAAATGCCCATATTCACAAATGCGGGC 1061
| ||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1215 CATACCAAACGATGAGTTGATAGCTGAGAAGCAAAAATGCCCATATTCACAAATGCGGGC 1274
Query 1062 AGACCTCCACAAGAAACTGGAGAAGCTTGAAAATGTTGATACAGTGGTTAACCTCAGCAT 1121
|||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1275 AGACCTCCACGAGAAAGTGGAGAAGCTTGAAAATGTCGATACAGTGGTTAACCTCAGCAT 1334
Query 1122 AGCTGTGATGGTTGTCGTTGTAATGGTGTCATCATCTTTGCAACGATGA 1170
||| |||||||| ||| ||||||||| ||||||||||| | |||||||
Sbjct 1335 AGCAGTGATGGTACTCGCTGTAATGGTCTCATCATCTTTACTACGATGA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58533835470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5