BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919625
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08770.1 | Symbols: PRA1.E | prenylated RAB acceptor 1.E | c... 953 0.0
> AT1G08770.1 | Symbols: PRA1.E | prenylated RAB acceptor 1.E |
chr1:2808883-2809747 FORWARD LENGTH=865
Length=865
Score = 953 bits (516), Expect = 0.0
Identities = 622/673 (92%), Gaps = 8/673 (1%)
Strand=Plus/Plus
Query 3 AACACAAAAT---CCAA-TCCGATGAATCAGAAACCTCCGGCGTACGGTTATGGCGGCGC 58
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 29 AACACAAAATCAACCAATTCCGATGAATCAGAAACCTCCGCCGTACGGTTATGGCGGCGC 88
Query 59 TGGTGGTGGAGGAGGAGTTGGACCTTCTTCCTCTTCCAACACCACAATCATCGGGACGTT 118
||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 89 TGGTGGT---GGAGGAGTCGGTCCTTCTTCCACTTCCAACACCACAATCATCGGGACGTT 145
Query 119 GAGTGCACGCGCCAAGCAAACGACGCAATCGATGATCACCACGCTCCGTCCATGGCGAGA 178
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 146 GAGTGCACGCGCCAAGCAGACGACGCAATCGATGATCACGACGCTCCGTCCATGGCGAGA 205
Query 179 GCTTCTCGATCTGTCCGCACTCTCTCTCCCTCACGGATACGACGAAGCCATGGCGCATCT 238
| |||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||
Sbjct 206 GATTCTCGATCTGTCCGCGCTCTCTCTCCCTCGCGGGTATGATGAAGCCATGGCGCATCT 265
Query 239 AAGGCACAATATCTCTTATTTCCGTGGAAACTACGCTCTTACCGTCCTCGCCATTGTTTT 298
|| |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 266 AAAGCACAACATCTCTTATTTCCGTGGAAATTACGCTCTCGCCGTTCTCGCCATTGTTTT 325
Query 299 CCTCGGCCTTATTTACCACCCGATGTCTTTGATCGCCTTCATCGTCGTCTTCATCGGATG 358
|||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||
Sbjct 326 CCTCGGCCTTATTTACCATCCGATGTCTATGATCGCTTTCATCGTCGTCTTCATCGGATG 385
Query 359 GATTCTCCTCTATTTCTCGCGAGACTCGAACGATTCGATTGTGATTTCGGGGAAACAAGT 418
|||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| ||||
Sbjct 386 GATTCTTCTCTATTTCTCTCGAGACGCAAACGATTCGATTGTGATTTCGGGGAAAGAAGT 445
Query 419 AGATGACCGGATCGTGCTGGTTTTACTCAGCTTGGTTACGGTTTTGGCATTGGTGTATAC 478
||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 446 AGATGACAAGATCGTGCTGGTTTTACTCAGCTTGGTAACGGTTTTGGCATTGGTATATAC 505
Query 479 AGATGTGGGCGAAAACGTTCTGGTTTCGCTGATCATTGGTTTACTCATCGTCGGAGCTCA 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 506 AGATGTGGGCGAAAACGTTCTGGTTTCGCTGATCATTGGTTTGCTCATCGTCGGAGCTCA 565
Query 539 CGCCGCTTTTCGTAATACTGACGATTTATTTCTTGATGAAGAAAGTGCCCGCCGTGGTGG 598
|| ||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 566 CGGCGCTTTTCGTAATACCGATGATTTGTTTCTTGATGAAGAAAGTGCTCGCCGTGGTGG 625
Query 599 ACTGGTATCCGCCGCTTCAGGAAACCGGCCACCATCGAGTTATACCCCAATTTGAGTAAA 658
||||| || |||| ||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 626 CCTGGTGTCTGCCGGTTCTGGTAACCGGCCACCGTCGAGTTATACCCCAATTTGAGTAAA 685
Query 659 ACCGGTTTGGAGA 671
||||||||||||
Sbjct 686 -CCGGTTTGGAGA 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5