BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919629
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08810.1 | Symbols: MYB60, AtMYB60 | myb domain protein 60 |... 1339 0.0
AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain p... 294 9e-79
AT5G62470.2 | Symbols: MYB96 | myb domain protein 96 | chr5:250... 267 2e-70
AT1G74650.1 | Symbols: ATY13, ATMYB31, MYB31 | myb domain prote... 226 3e-58
> AT1G08810.1 | Symbols: MYB60, AtMYB60 | myb domain protein 60
| chr1:2819065-2820395 REVERSE LENGTH=1123
Length=1123
Score = 1339 bits (725), Expect = 0.0
Identities = 812/853 (95%), Gaps = 9/853 (1%)
Strand=Plus/Plus
Query 8 GAGAGAGAGAAAGATGGGTAGGCCTCCATGCTGTGACAAGATAGGGATCAAGAAAGGACC 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 GAGAGAGAGAAAGATGGGTAGGCCTCCATGCTGTGACAAGATAGGGATCAAGAAAGGACC 113
Query 68 ATGGACTCCTGAAGAAGATATCATTCTTGTTTCTTACATCCAAGAACATGGTCCTGGAAA 127
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 114 ATGGACTCCTGAAGAAGATATCATTCTTGTTTCTTACATTCAAGAACATGGTCCTGGAAA 173
Query 128 CTGGAGATCTGTTCCCACCAATACTGGGCTACTGAGATGCAGCAAAAGTTGTAGACTCAG 187
||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||| ||
Sbjct 174 CTGGAGATCAGTTCCCACCAACACTGGGTTATTGAGATGCAGCAAAAGTTGTAGACTGAG 233
Query 188 ATGGACAAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGAAGG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ATGGACAAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGAAGG 293
Query 248 AATGATCATTCACTTGCAAGCCTTATTGGGTAACAAATGGGCGTCCATAGCTTCATATCT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 294 AATGATCATTCACTTGCAAGCCTTATTGGGTAACAAATGGGCGTCCATAGCTTCATACCT 353
Query 308 ACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTGAAGAAGAAGCT 367
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 354 ACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTAAAGAAGAAGCT 413
Query 368 CAACAAGTCCGAGAGTGACGAGAGAAGCAGAGCAGAGAACATGGTGTTGCAAACTTCCGC 427
||||||||| || ||||| ||||| |||||| |||||||||| | | |||||||||| |
Sbjct 414 CAACAAGTCTGACAGTGATGAGAGGAGCAGATCAGAGAACATTGCGCTGCAAACTTCTTC 473
Query 428 CACAAGAAACACCGTTAATCATAGATCTACCTATGCTTCAAGCACCGAAAACATTTCCCG 487
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GACAAGAAACACCATTAATCATAGATCTACCTATGCTTCAAGCACCGAAAACATTTCCCG 533
Query 488 CCTTCTTGAGGGTTGGATGAGAGCATCTCCAAAGAGTAGTACAACTACTACTACTTTCTT 547
|||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||
Sbjct 534 CCTTCTTGAGGGTTGGATGAGAGCGTCTCCAAAGAGTAGTACAAGTACTACT--TT-CTT 590
Query 548 GGAACAGAAAATGCAGAACCGGACAAACAATTTCATCGATCATCACAATGATCAGTTTCC 607
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 591 GGAACACAAAATGCAGAACCGGACAAACAATTTCATCGATCATCACAGCGATCAGTTTCC 650
Query 608 ATACGAGCAGCTTCAAGGTTCTTGGGAAGAGGGTCATAGCAAAGGAATCAACGGGAATGG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 651 ATACGAGCAGCTTCAAGGTTCTTGGGAAGAGGGTCATAGCAAAGGAATCAACGGGGATGA 710
Query 668 T--C-AGGGTGTAAAGAATTCAGAGAATAACAACGGtgatgatgttcatcatgaagatgg 724
| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGACCAGGGTATAAAGAATTCAGAGAATAACAACGGTGATGATGTTCATCATGAAGATGG 770
Query 725 tgatgatga---tgatgatcatcatAATGCTACACCACCATTGACATTTATTGAGAAATG 781
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGATCATGAGGATGATGATGATCATAATGCTACACCACCATTGACATTTATTGAGAAATG 830
Query 782 GCTTTTGGAGGAAACAAGTACTGCTGGGGGCCAAATGGAAGAGATGAGCCACTTGATGGA 841
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 831 GCTTTTGGAGGAAACAAGTACTACTGGGGGTCAAATGGAAGAGATGAGCCACTTGATGGA 890
Query 842 GCTCTCTAATATG 854
|||||||||||||
Sbjct 891 GCTCTCTAATATG 903
Score = 139 bits (75), Expect = 4e-32
Identities = 79/81 (98%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 854 GATATAAGTAGCTAAAATGCTCACTGCATAAGTTGTAACTAATCTAAACATGTCTACCCA 913
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1038 GATATAAGTAGCTAAAATGCTCACTGCATAAGTTGTAACTAATCTAAAGTTGTCTACCCA 1097
Query 914 TTTACATGAATAAAATCCAAT 934
|||||||||||||||||||||
Sbjct 1098 TTTACATGAATAAAATCCAAT 1118
> AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain
protein 94 | chr3:17539338-17541230 REVERSE LENGTH=1486
Length=1486
Score = 294 bits (159), Expect = 9e-79
Identities = 309/378 (82%), Gaps = 23/378 (6%)
Strand=Plus/Plus
Query 9 AGAG-AGAGAAAGATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGAC 66
|||| ||| | ||||||| || || ||||||||||||||||| ||| | ||||||||||
Sbjct 183 AGAGAAGATAGAGATGGGAAGACCACCATGCTGTGACAAGAT-TGGAGTGAAGAAAGGAC 241
Query 67 CATGGACTCCTGAAGAAGATATCATTCTT-GTTTCTTACATCCAAGAACATGGTCCTGGA 125
||||||| || || |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 242 CATGGACACCAGAGGAAGATATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGA 300
Query 126 AACTGGAGATCTGTTCCCAC-CAATACTGGGCT-ACTGAGATGCAGCAAAAGTTGTAGAC 183
|||||||||||||| || || || || || | | |||||| |||||||| ||||||
Sbjct 301 AACTGGAGATCTGTGCCTACTCAC-ACAGGTTTGAG-GAGATGTAGCAAAAGCTGTAGAT 358
Query 184 TCAGATGGACAAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCT--CATGA 241
| || ||||| |||||||| ||||||| || || |||||||| ||| | || |||||
Sbjct 359 TGAGGTGGACTAATTATCTTCGACCTGGGATCAAGCGTGGAAA-TTT-CACCGAGCATGA 416
Query 242 AGA-AGGAATGAT-CATTCA-CTTGCAAGC-CTTATTGGGTAACAAATGGGC-GTCCATA 296
||| | || |||| | | || ||| ||||| ||| ||||| |||| ||||| | | |||
Sbjct 417 AGAGAAGA-TGATTC-TCCATCTT-CAAGCTCTT-TTGGGAAACAGGTGGGCAG-CTATA 471
Query 297 GCTTCATATCTACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTG 356
|| |||||||| ||| |||| || ||||||||||| |||||||| |||||||| ||||||
Sbjct 472 GCATCATATCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTG 531
Query 357 AAGAAGAAGCTCAACAAG 374
||||| |||||||| |||
Sbjct 532 AAGAAAAAGCTCAAGAAG 549
> AT5G62470.2 | Symbols: MYB96 | myb domain protein 96 | chr5:25078991-25081101
REVERSE LENGTH=1745
Length=1745
Score = 267 bits (144), Expect = 2e-70
Identities = 294/364 (81%), Gaps = 20/364 (5%)
Strand=Plus/Plus
Query 21 ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCTGA 79
||||| || || || |||||||| ||||| ||| | |||||||| |||||||| || ||
Sbjct 244 ATGGGAAGACCACCTTGCTGTGAAAAGAT-TGGAGTGAAGAAAGGGCCATGGACACCAGA 302
Query 80 AGAAGATATCATTCTT-GTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 138
||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GGAAGACATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 361
Query 139 TTCCCACCA-ATACTGGGCT-ACTGA-GATGCAGCAAAAGTTGTAGACTCAGATGGACAA 195
| |||| || | || || | | || |||| ||||| || || ||| | |||||||| |
Sbjct 362 T-CCCAACACACACAGGTTTGA--GAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTA 418
Query 196 ATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGA-AGGA-ATGAT 253
||||||| |||| || ||||| |||||||| |||||| |||||||| | || | ||
Sbjct 419 ATTATCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACA--AT 476
Query 254 CATTCA-CTTGCAAGCC-TTATTGGGTAACAAATGGGC-GTCCATAGCTTCATATCTACC 310
|||| ||| |||||| || || || |||| |||||| | ||||||| ||||| || ||
Sbjct 477 TGTTCATCTT-CAAGCCCTT-TTAGGCAACAGATGGGCAG-CCATAGCATCATACCTTCC 533
Query 311 ACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTGAAGAAGAAGCTCAA 370
| |||| || ||||||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 534 AGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAA 593
Query 371 CAAG 374
|||
Sbjct 594 AAAG 597
> AT1G74650.1 | Symbols: ATY13, ATMYB31, MYB31 | myb domain protein
31 | chr1:28041191-28042995 FORWARD LENGTH=1517
Length=1517
Score = 226 bits (122), Expect = 3e-58
Identities = 279/353 (79%), Gaps = 18/353 (5%)
Strand=Plus/Plus
Query 21 ATGGGTAGGCCTCCATGCTGTGACAAGATAG-GGATCAAGAAAGGACCATGGACTCCTGA 79
|||||||| || || || || || ||||| | || | |||||||||||||||||||| ||
Sbjct 303 ATGGGTAGACCACCTTGTTGCGAGAAGATTGAGG-TGAAGAAAGGACCATGGACTCCCGA 361
Query 80 AGAAGATATCATTCTT-GTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 138
|||||| || | |||| || ||||| |||||| |||| || |||||||| ||||||||||
Sbjct 362 AGAAGACAT-AATCTTGGTCTCTTATATCCAACAACACGGCCCTGGAAATTGGAGATCTG 420
Query 139 TTCCC-ACCAATACTGGGCTACTGAGATGCAGCAAAAGTTGTAGACTCAGATGGACAAAT 197
|||| | || || || | || || || ||||| ||||| ||||| |||||||| |||
Sbjct 421 -TCCCTGCAAACACCGGTTTGCTAAGGTGTAGCAAGAGTTGCAGACTTAGATGGACTAAT 479
Query 198 TATCTGAGACCTGGAATTAAACGTGGAAACTTT-ACTCCTCATGAAGAAGGA-ATGATCA 255
|| || | || || || ||||| ||||| ||| |||| | |||| || | |||||||
Sbjct 480 TACCTTCGTCCCGGGATCAAACGAGGAAA-TTTCACTCAACCGGAAG-AGAAGATGATCA 537
Query 256 TTCA-CTTGCAAGC-CTTATTGGGTAACAAATGGGC-GTCCATAGCTTCATATCTACCAC 312
| || ||| ||||| ||| ||||| || | |||||| | | ||||| ||||||||||| |
Sbjct 538 TCCACCTT-CAAGCTCTT-TTGGGAAATAGATGGGCAG-CTATAGCATCATATCTACCTC 594
Query 313 AAAGAACGGACAATGATATCAAGAACTACTGGAACACACAT-TTGAAGAAGAA 364
| || || ||||||||||||||||||||||||||||| ||| || || |||||
Sbjct 595 AGAGGACCGACAATGATATCAAGAACTACTGGAACACTCATCTTAAA-AAGAA 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5