BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919631
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase ... 1035 0.0
> AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase
1 | chr1:2827061-2829315 FORWARD LENGTH=872
Length=872
Score = 1035 bits (560), Expect = 0.0
Identities = 636/672 (95%), Gaps = 7/672 (1%)
Strand=Plus/Plus
Query 1 TCACAAAAAGCCAACAAACAATGGCGAAAGGAGTGGCCGTTTTGAACAGCAGCGAGGGTG 60
|||| ||| ||||| |||||||||||||||||| || |||||||||||||| |||||||
Sbjct 133 TCAC-AAAGGCCAAGTAACAATGGCGAAAGGAGTTGCAGTTTTGAACAGCAGTGAGGGTG 191
Query 61 TTAAGGGGACTAT-TTTCTTCACCCAAGAAGGAGATGGTGTGACCACTGTGACTGGAACA 119
||| ||||||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 192 TTACGGGGACTATCTTT-TTCACCCAGGAAGGCGATGGTGTGACCACTGTGAGTGGAACA 250
Query 120 GTTTCTGGTCTTAAGCCTGGTCTTCATGGTTTCCATGTCCATGCTCTTGGTGACACCACT 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GTTTCTGGCCTTAAGCCTGGTCTTCATGGTTTCCATGTCCATGCTCTTGGTGACACCACT 310
Query 180 AACGGTTGCATGTCTACTGGTCCACATTTCAACCCTGATGGTAAAACACACGGTGCCCCT 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 311 AACGGTTGCATGTCTACTGGTCCACATTTCAACCCCGATGGTAAAACACACGGTGCCCCT 370
Query 240 GAGGATGCTAATCGACATGCTGGTGATCTAGGAAACATCACTGTTGGAGACGATGGAACT 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 371 GAGGATGCTAATCGACATGCTGGTGATCTAGGAAACATCACTGTTGGAGATGATGGAACT 430
Query 300 GCCACCTTCACAATCACTGACACCCAGATTCCTCTTACTGGACCAAACTCTATTGTTGGA 359
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 431 GCCACCTTCACAATCACTGATTGCCAGATTCCTCTTACTGGACCAAACTCTATTGTTGGT 490
Query 360 AGGGCTGTTGTTGTCCACGCAGACCCTGATGATCTCGGAAAGGGAGGCCATGAACTCAGC 419
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 491 AGGGCTGTTGTTGTCCATGCAGACCCTGATGACCTCGGAAAGGGAGGCCATGAACTCAGC 550
Query 420 CTGGCTACCGGAAACGCAGGCGGCCGTGTTGCTTGCGGCATCATTGGTCTCCAGGGCTAA 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CTGGCTACTGGAAACGCAGGCGGCCGTGTTGCTTGCGGCATCATTGGTCTCCAGGGCTAA 610
Query 480 AGCTGCTACGTTTCCAAAGAAGAGATTGCTGTAATAAGGAGGTCCAACCTTAGACCTGGG 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 611 AGCTGCTACGTTTCCAAAGAAGAGATTGATGTAATAAGGAGGTCCAACCTTAGACCTGGG 670
Query 540 TTGGGTAGTTTGTGTGTATCTTTTGGTGTGTTGCTAAAA-CC-ACTGAGCTTAGTGTGGC 597
|| ||||||| ||||||||||| |||||||| ||||||| || | |||||||||||||||
Sbjct 671 TTTGGTAGTT-GTGTGTATCTTCTGGTGTGTGGCTAAAAACCTA-TGAGCTTAGTGTGGC 728
Query 598 TCAATGCATTTTTAGTTCAGACAGAAAACAGAGAAAATTCCGTACTTCTATCATTTTATG 657
|||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 729 TCAAAGCATTTTTAATTCAGACAGAAAACAGAGAAAATTCCGTACTTTTATTATTTCATG 788
Query 658 AATAAAAAAGAG 669
||||||||||||
Sbjct 789 AATAAAAAAGAG 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5