BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919635
Length=470
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histon... 728 0.0
AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma ... 486 6e-137
> AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone
superfamily protein | chr1:2846949-2847800 REVERSE LENGTH=748
Length=748
Score = 728 bits (394), Expect = 0.0
Identities = 437/458 (95%), Gaps = 1/458 (0%)
Strand=Plus/Plus
Query 1 GTTCT-AGTTTCGAAGAAGACGATGAGTACAGGCGCAGGAAGCGGAACAACCAAAGGTGG 59
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 GTTCTAAATTTCGAAGAAGACGATGAGTACAGGCGCAGGAAGCGGAACAACCAAAGGTGG 162
Query 60 CAGAGGGAAGCCAAAGGCCACCAAATCCGTCTCTCGTTCGTCCAAAGCCGGTCTTCAATT 119
|||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 163 CAGAGGAAAGCCAAAGGCCACCAAATCCGTCTCTCGATCATCTAAAGCCGGTCTTCAATT 222
Query 120 CCCAGTCGGAAGAATCGCCAGATTCCTCAAAGCCGGTAAATACGCCGAGCGTGTCGGTGC 179
||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 223 CCCCGTCGGAAGAATCGCTAGATTCCTCAAATCCGGTAAATACGCCGAGCGTGTCGGTGC 282
Query 180 CGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCTGAGGTGTTGGAGCT 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 283 CGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGGTGTTGGAGCT 342
Query 240 TGCGGGAAACGCAGCAAGGGATAACAAGAAGACGCGTATAGTACCAAGACATATTCAGCT 299
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 343 GGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATAGTACCAAGACACATTCAGCT 402
Query 300 TGCAGTGAGGAACGATGAAGAGCTGAGTAAACTTCTGGGAAGTGTGACGATTGCGAATGG 359
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 403 TGCAGTGAGGAACGATGAAGAGTTAAGCAAACTTCTGGGAAGTGTGACGATTGCGAATGG 462
Query 360 AGGTGTTTTGCCTAATATACATCAGACTCTTTTGCCTTCCAAGGTTGGCAAGAACAAAGG 419
||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 463 AGGAGTTTTGCCAAATATTCATCAGACTCTTTTGCCATCCAAGGTTGGCAAGAACAAAGG 522
Query 420 AGATATTGGATCTGCTTCTCAGGAGTTCTGAGTTTCTT 457
|||||||||||||||||||||||||||||||| |||||
Sbjct 523 AGATATTGGATCTGCTTCTCAGGAGTTCTGAGGTTCTT 560
> AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma
histone variant H2AX | chr1:20414316-20415287 REVERSE LENGTH=801
Length=801
Score = 486 bits (263), Expect = 6e-137
Identities = 373/427 (87%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 22 ATGAGTACAGGCGCAGGAAGCGGAACAACCAAAGGTGGCAGAGGGAAGCCAAAGGCCACC 81
|||||| | ||||| || || |||||||| |||||||||||||| |||||||| || | |
Sbjct 82 ATGAGTTCCGGCGCCGGCAGTGGAACAACTAAAGGTGGCAGAGGAAAGCCAAAAGCTA-C 140
Query 82 AAA-TCCGTCTCTCGTTCGTCCAAAGCCGGTCTTCAA-TTCCCAGTCGGAAGAATCGCCA 139
||| ||||||||||| || || ||||| ||||||||| ||||| || ||||||||||| |
Sbjct 141 AAAGTCCGTCTCTCGATCTTCTAAAGCTGGTCTTCAATTTCCC-GTTGGAAGAATCGCTA 199
Query 140 GATTCCTCAAAGCCGGTAAATACGCCGAGCGTGTCGGTGCCGGAGCTCCGGTCTATCTCT 199
||||||| |||||||||||||||||||| ||||| |||||||| ||||| || |||||||
Sbjct 200 GATTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCT 259
Query 200 CCGCTGTTCTCGAGTACCTCGCCGCTGAGGTGTTGGAGCTTGCGGGAAACGCAGCAAGGG 259
|||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct 260 CCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAGCTAGCTGGAAATGCAGCAAGAG 319
Query 260 ATAACAAGAAGACGCGTATAGTACCAAGACATATTCAGCTTGCAGTGAGGAACGATGAAG 319
||||||||||||| ||||| |||||| | || ||||||||||||||||||||||||||||
Sbjct 320 ATAACAAGAAGACACGTATCGTACCACGGCACATTCAGCTTGCAGTGAGGAACGATGAAG 379
Query 320 AGCTGAGTAAACTTCTGGGAAGTGTGACGATTGCGAATGGAGGTGTTTTGCCTAATATAC 379
|||| ||||||||||| |||||||| || ||||| |||||||| |||||||| || || |
Sbjct 380 AGCTTAGTAAACTTCTTGGAAGTGTAACAATTGCTAATGGAGGAGTTTTGCCCAACATTC 439
Query 380 ATCAGACTCTTTTGCCTTCCAAGGTTGGCAAGAACAAAGGAGATATTGGATCTGCTTCTC 439
||||||||||| | || || |||||||| ||||||||||| ||||| |||||||||||||
Sbjct 440 ATCAGACTCTTCTCCCATCAAAGGTTGGAAAGAACAAAGGCGATATCGGATCTGCTTCTC 499
Query 440 AGGAGTT 446
| |||||
Sbjct 500 AAGAGTT 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22354195415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5