BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919640
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08930.1 | Symbols: ERD6 | Major facilitator superfamily pro... 2608 0.0
> AT1G08930.1 | Symbols: ERD6 | Major facilitator superfamily protein
| chr1:2873465-2877223 FORWARD LENGTH=1874
Length=1874
Score = 2608 bits (1412), Expect = 0.0
Identities = 1494/1534 (97%), Gaps = 4/1534 (0%)
Strand=Plus/Plus
Query 1 GAAGCA-GA--AGATTTTTTGGAATGGAGAGACAAAAGAGCATGGAAAAAGGGTTACTGA 57
|||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 117 GAAGCAGGAGGAGACTTTTTGGAATGGAGAGACAAAAGAGCATGGAAAAAGGGTTACTCA 176
Query 58 GAAAGAGCTTAAGCATACGAGAGAGAAAGTTCCCTAACGAAGACGCTTTCTTAGAAGCCG 117
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 177 GGAAGAGCTTAAGCATACGTGAGAGAAAGTTCCCTAACGAAGACGCTTTCTTAGAATCCG 236
Query 118 GTTTATCGAGGAAATCTCCGAGAGAGGTCAAGAAACCTCATAACGACGATGATGATTGTC 177
||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||| ||||
Sbjct 237 GTTTATCGAGGAAGTCTCCGCGAGAGGTCAAGAAACCTCAAAACGACGATGGTGAATGTC 296
Query 178 GTGTCACCGCCTCTGTTTTCCTCAGCACCTTTGTTGCCGTCTCTGGCTCCTTCTGTACCG 237
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 297 GTGTTACCGCCTCTGTTTTCCTCAGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCG 356
Query 238 GTTGTGGCGTTGGTTTTTCATCGGGTGCTCAAGCAGGGATTACCAAAGATTTATCTCTCT 297
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 GTTGTGGCGTTGGTTTTTCATCGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCT 416
Query 298 CCGTTGCAGAATACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CCGTTGCAGAATACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG 476
Query 358 TATTCAGCGGTAAAGTCGCCGATGTCTTGGGAAGAAAACGGACGATGTTGTTTTGCGAAT 417
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TATTCAGCGGTAAAGTCGCTGATGTCTTGGGAAGAAAACGGACGATGTTGTTTTGCGAAT 536
Query 418 TCTTCTGTATCACAGGCTGGCTTTGTGTAGCACTGGCTCAGAATGCAATGTGGTTGGACT 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 537 TCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGAATGCAATGTGGCTGGACT 596
Query 478 GTGGAAGATTGTTACTTGGAATCGGCGTTGGTTTATTTAGCTACGTGATTCCGGTGTATA 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 597 GTGGAAGATTGTTACTTGGAATCGGCGTTGGTATATTTAGCTACGTGATTCCGGTGTATA 656
Query 538 TAGCCGAAATTGCACCAAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGTTGATGC 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TAGCCGAAATTGCACCTAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGTTGATGC 716
Query 598 AAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAA 776
Query 658 CAGTAGTCGGATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAGTAGTCGGATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAAT 836
Query 718 CTCCAAGATGGCTGGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTCCAAGATGGCTGGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCC 896
Query 778 TTAGGGGATCTGACGTCGATATTTCTCGTGAAGCAAACACAATTAGAGATACCATTGACA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTAGGGGATCTGACGTCGATATTTCTCGTGAAGCAAACACAATTAGAGATACCATTGACA 956
Query 838 TGACAGAAAACGGTGGTGAAAGTAAGATGTCTGAATTGTTTCAGAGACGATACGCATATC 897
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGACAGAAAACGGTGGTGAAACTAAGATGTCTGAATTGTTTCAGAGACGATACGCATATC 1016
Query 898 CGTTAATTATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CGTTAATTATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTA 1076
Query 958 CCTATTATGCTAGTAGCCTCTTCAACAAAGGAGGATTTCCAAGTGCTATTGGCACATCCG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCTATTATGCTAGTAGCCTCTTCAACAAAGGAGGATTTCCAAGTGCTATTGGCACATCCG 1136
Query 1018 TAATAGCCACAATTATGGTTCCGAAAGCGATGCTGGCAACAATCCTAGTCGATAAAATGG 1077
|||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 1137 TAATAGCCACAATTATGGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGG 1196
Query 1078 GGAGGAGAACGCTTCTAATGGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAA 1137
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGAGGAGAACGCTCCTAATGGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAA 1256
Query 1138 GTGTTTCTTACGGTTTCCAGTCCTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTT 1197
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1257 GTGTTTCTTACGGTTTCCAGTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTT 1316
Query 1198 GCATCGGCGTATTGGGTCACATTGTGTCATTTGCGATGGGAATGGGAGGACTACCATGGA 1257
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1317 GCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGA 1376
Query 1258 TTATAATGGCTGAGATATTTCCTATGAATGTGAAGGTGTCAGCTGGGACCTTAGTTACCG 1317
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1377 TTATAATGGCTGAGATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAGTTACTG 1436
Query 1318 TAACCAATTGGTTATTTGGTTGGATTATCACATATACTTTCAATTTCATGCTAGAATGGA 1377
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1437 TAACCAATTGGTTATTTGGTTGGATTATCACATACACTTTCAATTTTATGCTAGAATGGA 1496
Query 1378 ATGCATCAGGAATGTTCCTTATCTTCTCAATGGTCTCCGCCAGTTCGATCGTATTTATAT 1437
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATGCATCAGGAATGTTCCTCATCTTCTCAATGGTCTCCGCCAGTTCGATCGTATTTATAT 1556
Query 1438 ACTTTTTGGTACCTGAGACGAAAGGCCGGTCACTTGAAGAAATACAAGCATTGCTCAACA 1497
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1557 ACTTTTTGGTACCTGAGACAAAAGGCCGATCACTTGAAGAAATACAAGCACTGCTCAACA 1616
Query 1498 ACTCTGTGCAATAATATCATTTTTCTTTTCTCTT 1531
||||||||||||||||||||||||||||| ||||
Sbjct 1617 ACTCTGTGCAATAATATCATTTTTCTTTT-TCTT 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75551820225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5