BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919642
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08960.1 | Symbols: CAX11, ATCAX11 | cation exchanger 11 | c... 2671 0.0
> AT1G08960.1 | Symbols: CAX11, ATCAX11 | cation exchanger 11 |
chr1:2879642-2882231 FORWARD LENGTH=2051
Length=2051
Score = 2671 bits (1446), Expect = 0.0
Identities = 1604/1680 (95%), Gaps = 11/1680 (1%)
Strand=Plus/Plus
Query 7 TGAATCTGAATGGCATGGAATTGATATCTTCTTCAACCATTGGAAACTCAGCTCTGTGTT 66
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 43 TGAATCTGAATGGCATGGAATTGATTTCTTCTTCAACAATTGGAAACTCAGCTCTGTGTT 102
Query 67 TAACCCTAATCTCCATTCTCATCTTCTTCTTCCTCTTCACTACAACCACCATTCCCACTT 126
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 103 TAACCCTAATCTCCATTCTCATCTTCTTCTT-C-C-TCACTACAACCACCATTCCCACTT 159
Query 127 TCCCGGATCATCCTCTTCGTTCTCTTCTCGACGACT--C----CACTACGAACTCTAGCT 180
||||||||||||||||||||||||||||||| |||| | |||||||||| |||||
Sbjct 160 TCCCGGATCATCCTCTTCGTTCTCTTCTCGATGACTCCCAAATCACTACGAACAGTAGCT 219
Query 181 CAATCGTTAATCCCAAATCCTCTTGTTTATCCTCTAGATCCCACGATAATGGCGGCGTCA 240
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 220 CAATCGTTAATCCCAAATCCTCTTGTGTCTCCTCTAGATCCCACGATAATGGCGGCGTCA 279
Query 241 TCAACTATTTCTCCCTCCATTACTGTATCTTCAACGAAAACTTATTCTTCTCGATCCCAA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 280 TCAACTATTTCTCCCTCCATTACTGTATCTTCAACGAAAACCTATTCTTCTCGATCCCAA 339
Query 301 TCTTGTCTCTTCTCATTCTTCTTCACTTTTACATACTTATCAAAACCGCTCAGACTCACT 360
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 340 TATTGTCTCTTCTCATTCTTCTTCACTTTTACATACTCATTAAAACCGCTCAGACTCATT 399
Query 361 TCTCCACCGTCACTACAAAGCTCGCCGATCGCCTCAATCTCTCTCCCAGTATGGCCGCTG 420
||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||
Sbjct 400 TCTCCACCGTCACTACAAAGCTCGCCGATCGTCTCAATCTCTCTCCAAGCATGGCTGCTG 459
Query 421 TGACTCTCTTAGCCTTGGGTAATGGCGCACCTGACGTGTTTGCCTCTGTTGCTGCTTTGC 480
||||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||
Sbjct 460 TGACTCTTTTAGCCTTAGGTAATGGCGCACCTGATGTCTTTGCCTCTGTTGCCGCCTTGC 519
Query 481 GTGGTGGTCAGTACCGAACCGGATTCGGTGCTATCTTATCCGCCGGAACTTTCGTCTCTG 540
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 520 GTGGTGGTCAGTATCGAACCGGATTCGGAGCTATCTTATCCGCTGGAACTTTCGTCTCTG 579
Query 541 CCTTTGTGGTTGGGTTCGTCGCGATCTATGCTGCGCCGTTTCCGGTGGATGCTGCGTCCT 600
||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 580 CCTTTGTAGTTGGGTTCGTTGCGATCTATGCAGCGCCGTTTCCGGTGGATGCTGCGTCAT 639
Query 601 TTGTCAGAGATGTGCTTTTTTATTTGATTGCTGCTTCGTTCTTGTTCTATGTGTACTTGA 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 640 TTGTCAGAGATGTGCTTTTTTATTTGATTGCTGCTTTGTTCTTGTTCTATGTGTACTTGA 699
Query 661 GTGGTGAGATATTTGTGTGGCAAGCTATAGGGTTCGTTGGGTTTTATATTTTCTTCGTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 700 GTGGTGAGATATTTGTGTGGCAAGCTATAGGGTTCGTTGGGTTTTATATATTCTTCGTTG 759
Query 721 GTTTTGTTTTCTGGATGGATTTTGGTACCAATGTTGAGAAAGGGAAAATTATCAGTGAGG 780
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 760 GTTTCGTCTTCTGGATGGATTTTGGTACCAATGTTGAGAAAGGGAAAAGTATCAGTGAGG 819
Query 781 AAGAGAAGGATTTGTTGAGAGTTCAGGATTGTGAGATTGCTGCAGGTCCTCTTGTGG-GT 839
|||||||||||||||||||| ||||||||||||||||||| |||||| |||||| || ||
Sbjct 820 AAGAGAAGGATTTGTTGAGACTTCAGGATTGTGAGATTGCCGCAGGTTCTCTTG-GGAGT 878
Query 840 TATAAAGCAGAGAAAGACCATCAATTTTCCGGAATTTTTCGGCTTTATGGAACGATCTCG 899
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 879 TATAAAGCAGAGAAAGAACATCAATTTTCAGGAATTTTTCGGCTTTATGGAACGATCTCG 938
Query 900 AGGATGTGGGAGACTCCTGTATCAGTTCTTTTGAACCTTACCATCCCAAAACCTTCTCCT 959
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AGGATGTGGGAAACTCCTGTATCAGTTCTTTTGAACCTTACCATCCCAAAACCTTCTCCT 998
Query 960 TCTGAATGGTCTAGGTTTTATCGTTCTGCCAACATTGTTTTCTGCCCTTTTGCCCTTTTA 1019
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 999 TCGGAATGGTCTAGGTTTTATCGCTCTGCCAACATTGTTTTCTGCCCTTTTGCCCTTTTA 1058
Query 1020 TACACCTGCAACTCGTTTGTACAACTAAACCACCCAATTTCATTCCTCTTTCCAAACACC 1079
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TACACTTGCAACTCTTTTGTACAACTAAACCACCCAATTTCATTCCTCTTTCCAAACACC 1118
Query 1080 CATCTCCCGCTTTGGCTTATTGTCCTCTTCATGACGTCTTCCCTAGCGTTCCTCCACTTC 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 CATCTCCCGCTTTGGCTTGTTGTCCTCTTCATGACGTCTTCCCTAGCGTTCCTCCACTTC 1178
Query 1140 ACAGTAGAGAAACAACCACCAAAAACCGAGCAACTGCCAGTCATCGTTGTAGCTTTCATA 1199
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1179 ACAGTAGAAAAACAACCACCAAAAACCGAGCAACTGCCGGTCATTGTTGTAGCTTTCATA 1238
Query 1200 ATGAGTGTTTTCTGGATATCAACAATTGCTGGTGAGCTCCTTAACTGCTTGGCTGCACTT 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1239 ATGAGTGTTTTCTGGATATCAACAATTGCTGGTGAGCTCCTTAACTGCTTGGCTGCGCTT 1298
Query 1260 GGAACCTTACTTAAACTGCCTCCGGCACTCCTTGGCCTAACCGTTCTTGCTTGGGGAAAC 1319
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1299 GGAACCCTCCTTAAACTGCCTCCGGCGCTCCTTGGCCTAACCGTTCTTGCTTGGGGAAAC 1358
Query 1320 TCGGTTGGTGACCTAGTTGCGGACGTGGCAGTTGCAAAGGCAGGAAGACCAGCAATGGCT 1379
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1359 TCGGTTGGTGACCTAGTTGCTGACGTGGCAGTTGCAAAGGCAGGTAGACCAGCAATGGCT 1418
Query 1380 ATGGCCGGTTGCTTTGCAGGTCCAATGTTTAACATGCTTGTTGGACTTGGATCGGCCTTG 1439
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 ATGGCCGGTTGTTTTGCAGGTCCAATGTTTAACATGCTTGTTGGACTTGGATCGGCCTTG 1478
Query 1440 GTGATGCAAACAGCTAATGTGTATCCAAACGCTTACAAACTTGGATTCCATGTAGGTATT 1499
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1479 GTGATGCAAACAGCTAATGTATATCCAGACGCTTACAAACTTGGATTCCATGTAGGTATT 1538
Query 1500 GTGATCGCTTTCGTCTTCTTGTTGCTTAGTCTAATGGGATCTCTGTTGGTTATAACCTGG 1559
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1539 GTGATAGCTTTCGTCTTCTTGTTGCTTAGTCTAATGGGATCTCTGTTGGTAATAACCTGG 1598
Query 1560 TCTAGATTCCGAGTTCCGAGATTATGGGGGATCTGTCTTGTTGGACTGTATGTTGCTTTC 1619
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1599 TCTAGATTCCGAGTTCCGAGATTCTGGGGGATCTGTCTTGTTGGACTGTATGTTGCTTTC 1658
Query 1620 ACGTTTGTTAGTTTGATCATCGCCAGCGTTTCAAGTTGATCATACACGTGAAGTCTGCAC 1679
|| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1659 ACATTTGTTAGTTTGATCATCGCCAGCGTTTCAACCTGATCATATGCGTGAAGTCTGCAC 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82981500885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5