BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919644
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08980.1 | Symbols: ATAMI1, AMI1, ATTOC64-I, TOC64-I | amida... 2191 0.0
> AT1G08980.1 | Symbols: ATAMI1, AMI1, ATTOC64-I, TOC64-I | amidase
1 | chr1:2884411-2886620 FORWARD LENGTH=1512
Length=1512
Score = 2191 bits (1186), Expect = 0.0
Identities = 1280/1326 (97%), Gaps = 4/1326 (0%)
Strand=Plus/Plus
Query 1 TTGGTCATCATCTACCTTCTCAGAACGGGAGCTGCATCAATGGCGACCAATAATGATTTT 60
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6 TTGGTCGTCATCTACCTTCTCAGAAAGGGAGCTGCATCAATGGCGACCAATAATGATTTT 65
Query 61 GGAGCTTTCATTGAGAAAGTTACAATCTCTCCAACTTCTACTTCCTCGTTGCCTCCTTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 66 GGAGCTTTCATTGAGAAAGTTACAATCTCTCCAACTTCTACTTCCTCGTCGCCTCCTTCT 125
Query 121 CTACAGGGTCTTACTTTCGCCATTAAAGACATTTTTGATGTGGAAGGACACGTTACCGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 126 CTACAGGGTCTTACTTTCGCCATTAAAGACATTTTTGATGTGGAAGGACGCGTTACCGGT 185
Query 181 TTTGGTAACCCGGATTGGTTAAGGACACA-TACGGCAGCTACTTCTACAGCTCCCGTAGT 239
||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 186 TTTGGTAACCCGGATTGGTTAAGGACACACT-CGGCAGCTACTTCTACAGCTCCAGTAGT 244
Query 240 TTCATCTCTCTTAGAAGCTGGTGCTACAGCTTTGGGTATTACCATTATGGATGAAATGGC 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 245 TTCATCTCTCTTAGAAGCTGGTGCCACAGCTTTGGGTATTACCATTATGGATGAAATGGC 304
Query 300 TTACAGTATAAACGGAGAAAATGCGCATTATGGGACTCCAAGAAACCCGATTGCTTTCGA 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 305 TTACAGTATAAACGGAGAAAATGCGCATTATGGGACTCCGAGAAACCCGATTGCTTTCGA 364
Query 360 TAGAGTGCCTGGCGGATCATCGAGTGGCTCAGCCGTAGCTGTAGCTGCTCGTCTTGTGGA 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TAGAGTGCCTGGGGGATCATCGAGTGGCTCAGCCGTAGCTGTAGCTGCTCGTCTTGTGGA 424
Query 420 TTTTTCTATTGGAACTGATACCGGAGGGAGTGTACGAGTTCCAGCATCTTACTGTGGAAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 425 TTTTTCTATTGGAACTGATACCGGAGGGAGTGTACGAGTTCCAGCATCTTACTGTGGGAT 484
Query 480 TTTTGGTTTCCGGCCATCGCACGGTGCAGTTTCCACTGTCGGAGTTACTCCAATGGCTCA 539
||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 485 TTTCGGTTTCCGGCCATCCCACGGTGCAGTTTCCACTGTCGGACTTACTCCAATGGCTCA 544
Query 540 GAGCTTCGACACAGTTGGATGGTTTGCTCGGGACACAGCCACTTTGAAACGTGTAGGCTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 545 GAGCTTCGACACAGTTGGATGGTTTGCTCGGGACACAGCCACTTTGAAACGTGTAGGTTG 604
Query 600 CGTTCTCCTGCAGCAGGATCACTTGAACCCCATCGAACCATCTCAATTGATTATCGCAGA 659
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 605 CGTTCTCCTGCAGCAGCATCACTTGAACCCCATCGAACCATCTCAACTGATTATCGCGGA 664
Query 660 TGACTGCTTCAAGCTGTGTAGTGTACCACATGATCTGTTGGTGCAGCCTCTAGTTGGATC 719
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 665 TGACTGCTTCAAGCTGTGTAGTGTACCGCATGATCTCTTGGTGCAGCCTCTGGTTGGATC 724
Query 720 CGTGGAAAAATCGTTTGGAGGCAACACTGTAGTAAAGAAGGTGAATCTTGGAGAGTATAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 725 CGTGGAAAAATCGTTTGGAGGCAACACTGTAGTAAAGAAGGTGAATCTTGGAGAGTACAT 784
Query 780 TGAACAGAATGTTCCAAGCCTTAAACATTTCATGACAAGTGACGATGTCACGACACAACA 839
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 785 TGGACAGAATGTTCCAAGCCTTAAACATTTCATGACAAGTGACGATGTCACTACACAACA 844
Query 840 AGAGTTCTGCATTCCGTCTCTCATGGCTCTATCGAGTTCAATGAGATTGTTACAGAGGCA 899
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 845 AGAGTTCTGCATTCCGTCTCTCATGGCCCTATCGAGTTCAATGAGATTGTTACAAAGACA 904
Query 900 TGAATTCAAGATAAACCACGGTGCATGGATCTCGTTGGTGAAGCCAGAGTTTGGTCCTGG 959
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 905 TGAATTCAAGATAAACCACGGTGCATGGATCTCGTCGGTGAAGCCAGAGTTTGGTCCTGG 964
Query 960 AATATCAGCACGAATCGAGGAAGCTATCAGGACGTCTGAAGAGAAGATCGACCTTTGCCG 1019
|||||||| |||||| |||||||||||||| || || || ||||||||||||| ||||||
Sbjct 965 AATATCAGAACGAATTGAGGAAGCTATCAGAACATCCGACGAGAAGATCGACCATTGCCG 1024
Query 1020 GTCCGTGAAATCTGAACTAATAACGGCTCTTTCAACTTTGCTCGGGGAGAAGGGTGTGTT 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GTCCGTGAAATCTGAACTGATAACGGCTCTTTCAACTTTGCTCGGGGAGAAGGGTGTGTT 1084
Query 1080 GGTGATTCCAACGGTACCAGGTCCTCCACCGCATCTCCAAGCTAATGTGGCTGCACTTGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GGTGATTCCAACGGTACCAGGTCCTCCACCGCATCTCCAAGCTAATGTGGCTGCACTTGA 1144
Query 1140 ATCTTTCCGCAGCAGAGCCTTCAGCTTGTTGTCGATAGGC-GGAGTTTCTGGATTCTGTC 1198
|||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct 1145 ATCTTTCCGCAGCAGAGCCTTCAGCTTGTTGTCGATCG-CAGGCGTTTCTGGATTCTGTC 1203
Query 1199 AGGTGAGCATACCATTGGGGCTACACGAAAATCTTCCGGTATCGGTATCATTGGTAGCTA 1258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1204 AGGTGAGCATACCATTGGGGCTACACGAAAATCTTCCGGTTTCGGTATCATTGGTAGCTA 1263
Query 1259 AGTATGGCTCAGACGGTTTTCTTCTCAGCCTTGTGGATTCCCTTACGGCATTCATTTGAT 1318
||||||||||||||||||||||||| || ||||||||||||||| | ||||| |||||||
Sbjct 1264 AGTATGGCTCAGACGGTTTTCTTCTGAGTCTTGTGGATTCCCTTGCTGCATTTATTTGAT 1323
Query 1319 TGACAT 1324
||||||
Sbjct 1324 TGACAT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5