BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919647
Length=2879
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09010.1 | Symbols: | glycoside hydrolase family 2 protein ... 4549 0.0
> AT1G09010.1 | Symbols: | glycoside hydrolase family 2 protein
| chr1:2895166-2899384 REVERSE LENGTH=3025
Length=3025
Score = 4549 bits (2463), Expect = 0.0
Identities = 2732/2865 (95%), Gaps = 6/2865 (0%)
Strand=Plus/Plus
Query 16 ACTAAAATGGCGGAGATCGGGAAGACGGTGTTAGATTCCGGCTGGATAGCGGCGAGATCC 75
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 92 ACTAAAATGGCGGAGATCGGGAAGACGGTGTTAGATTTCGGCTGGATAGCGGCGAGATCC 151
Query 76 ACGGAGGTCGATGTCGACGGCGTTCAGCTCACTACCACCAATCCTCCGGCTGTCAGCTCC 135
||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct 152 ACGGAGGTCGATGTCAACGGCGTTCAGCTCACTACCACCAATCCTCCGGCCATCAGTTCC 211
Query 136 GAATCTCGGTGGATGGAAGCCGTCGTCCCTGGAACTGTTTTGGGCACTTTGGTCAAAAAC 195
|||||||||||||||||||||| ||| ||||||||||| |||||||| ||||| ||||||
Sbjct 212 GAATCTCGGTGGATGGAAGCCGCCGTACCTGGAACTGTATTGGGCACATTGGTGAAAAAC 271
Query 196 AAAGCTATTCCGGATCCCTTCTATGGACTTGAAAATGAAGCTATCACAGATATTGCCGAT 255
||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 272 AAAGCAATTCCGGATCCTTTTTATGGACTTGAAAATGAAGCGATCACAGATATTGCCGAT 331
Query 256 TCCGGAAGGGACTATTACACTTTCTGGTTCTTCACCAATTTCCAATGTAAAAGGTTGTTG 315
|||||||||||||| |||||||||||||||||||| || ||||||||| ||||||| |||
Sbjct 332 TCCGGAAGGGACTACTACACTTTCTGGTTCTTCACTAAATTCCAATGTCAAAGGTTATTG 391
Query 316 AATCAATACGTGCATCTGAACTTT-CGTGCCATCAACTACTCTGCGGAAGTGTATGTAAA 374
||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||||||
Sbjct 392 AATCAATACGTGCATTTGAA-TTTCCGTGCCATCAACTACTCTGCACAAGTGTTTGTAAA 450
Query 375 TGGTCACAAGACAGTGCTTCCCAAAGGGATGTTTCGCAGACATACACTTGACGTCACTGA 434
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TGGCCACAAGACAGAGCTTCCCAAAGGGATGTTTCGCAGACATACACTTGACGTCACTGA 510
Query 435 TATTCTGCGTCCTGAGAACAATTTGCTTGCTGTTATTGTTAATCCCCCAGATCATCCTGG 494
|||||| | |||||||| |||||| |||||| |||||||| |||||||||||||||||||
Sbjct 511 TATTCTCCATCCTGAGAGCAATTTACTTGCTCTTATTGTTCATCCCCCAGATCATCCTGG 570
Query 495 GACTATACCTCCCGAGGGAGGCCAAGGTGGTGATCACGAGATTGGAAAAGATGTAGCTGC 554
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 571 GACTATACCTCCCGAGGGAGGCCAAGGTGGTGATCATGAGATTGGAAAAGATGTAGCTGC 630
Query 555 ACAGTATGTGGAAGGTTGGGACTGGATTTGTCCAATAAGGGACCGGAATACCGGCATATG 614
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 631 ACAGTATGTGCAAGGTTGGGACTGGATTTGTCCAATAAGGGACCGGAATACTGGCATATG 690
Query 615 GGATGAAGTGTCAATATCTGTCACTGGGCCAGTAAGAATAATTGATCCCCATTTGGTCTC 674
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 691 GGATGAAGTGTCAATATCTGTCACCGGGCCTGTAAGAATAATTGATCCCCATTTGGTCTC 750
Query 675 AACCTTCTTTGACGATTACAAGAGAGCTTACTTGCATGTGACTGCTGAACTGGAAAACAA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AACCTTCTTTGACGATTACAAGAGAGCTTACTTGCATGTGACTGCTGAACTGGAAAACAA 810
Query 735 AAGCACATGGAATGCTGACTGTTCTGTGAATATTCAAATAACAGCCGAACTTGAAAACAG 794
||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 811 AAGCACATGGAATACTGAATGTTCTGTGAATATTCAAATAACAGCCGAACTCGAAAACGG 870
Query 795 TGTCTGTTTAGTAGAGCATCTTCAGACAGAGAATGTTTTGATCCCTGCTCAAGGACGTAT 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TGTCTGTTTAGTAGAGCATCTTCAGACAGAGAATGTTTTGATCCCTGCTCAAGGACGTAT 930
Query 855 TCAGCACACATTTAAACCGCTCTTTTTCTATAAACCTGAATTGTGGTGGCCCAACGGGAT 914
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 931 TCAGCACACATTTAAACCACTCTATTTCTATAAACCTGAATTGTGGTGGCCCAACGGGAT 990
Query 915 GGGAAAGCAAAACCTTTATGACATCTTGATCACTGTTGATGTGAAAGAATTCGGGGAATC 974
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 991 GGGAAAGCAAAACCTTTATGACATCTTGATCACTGTTGTTGTGAATGAATTCGGAGAATC 1050
Query 975 CGATTCGTGGATGCAGCCATTTGGATTCCGTAAGATTGAGAGTGATATTGATAGTGTCAC 1034
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 1051 TGATTCGTGGATGCAGCCATTTGGATTCCGAAAGATTGAGAGTGTTATTGATAGTGTTAC 1110
Query 1035 TGGTGGAAGGCTGTTCAAGATCAATGGAGAGCCGATCTTCATCCGTGGTGGCAATTGGAT 1094
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1111 TGGTGGAAGGCTGTTCAAGATCAACGGAGAGCCGATCTTCATCCGTGGTGGCAATTGGAT 1170
Query 1095 ACTATCAGATGGACTGTTACGCCTCTCTAAAGAACGTTACAGAACCGACATAAAGTTCCA 1154
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1171 ACTATCAGATGGACTGTTACGTCTCTCTAAAGAACGTTACAGAACCGACATAAAATTCCA 1230
Query 1155 TGCAGATATGAACATGAACATGATCCGTTGCTGGGGCGGTGGGTTGGCTGAAAGGCCAGA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TGCAGATATGAACATGAACATGATCCGTTGCTGGGGCGGTGGGTTGGCTGAAAGGCCAGA 1290
Query 1215 GTTTTATCACTTTTGTGATATCTACGGTTTGTTGGTCTGGCAAGAGTTTTGGATCACTGG 1274
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1291 GTTTTATCACTTTTGTGATATCTACGGCTTGTTGGTGTGGCAAGAGTTTTGGATCACTGG 1350
Query 1275 AGATGTTGATGGAAGAGGTGTTCCAGTATCAAATCCGAACGGACCACTAGACCATGACTT 1334
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1351 CGATGTTGATGGAAGAGGTGTTCCAGTATCAAATCCGAATGGACCACTAGACCATGAATT 1410
Query 1335 ATTCCTCTTATGTGCTCGTGATACTGTCAAACTTTTGAGAAACCATCCAAGCCTAGCTCT 1394
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1411 ATTCCTCTTATGTGCTCGTGATACTGTCAAACTTCTGAGAAACCATCCAAGCCTGGCTCT 1470
Query 1395 TTGGGTGGGTGGAAATGAACAAGTTCCGCCAAAAGACATAAATGAGGCTCTAAAGGAAGA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1471 TTGGGTGGGTGGAAATGAACAAGTTCCGCCAAAAGACATAAATGAGGCTCTAAAGCAAGA 1530
Query 1455 CCTTAGGCTTCACTCTTATTTTGAAACCCAATTATTATCAGACAAGGATTCCGATCCTAG 1514
|||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1531 CCTTAGGCTTCATTCTTATTTTGAAACCCAATTGTTATCAGACAAAGATTCAGATCCTAG 1590
Query 1515 TGTTTATCTTGACGGTACTAGAGTTTATATTCAAGGATCTATGTGGGACGGTTTTGCAGA 1574
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1591 TGTTTATCTTGACGGTACTAGAGTTTATATTCAAGGATCTATGTGGGACGGCTTTGCAGA 1650
Query 1575 TGGAAAGGGAAACTTCACTGATGGCCCTTATGAGATTCAATACCCTGAAGAtttttttAA 1634
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1651 TGGAAAGGGGAACTTCACTGACGGCCCTTATGAGATTCAATACCCTGAAGATTTTTTTAA 1710
Query 1635 AGACACATATTACAAGTATGGGTTCAATCCGGAGGTTGGTTCGGTTGGAATGCCAGTTGC 1694
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1711 AGACACATATTACAAGTATGGGTTCAATCCGGAGGTCGGCTCGGTTGGAATGCCAGTTGC 1770
Query 1695 AGATACAATAAGAGCGACAATGCCTCCAGAAGGTTGGGA-GATTCCTCTGTTTAAAAAGG 1753
||| || |||||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct 1771 AGAGACGATAAGAGCGACAATGCCTCCAGAAGGTT-GGACGATTCCTCTGTTCAAAAAGG 1829
Query 1754 GTTTGGACGGGTTTGTTGAAGAAGTGCCAAATCGAATGTGGGATTATCACAAGTACATTC 1813
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 GTTTGGACGGGTTTATTAAAGAAGTGCCAAATCGAATGTGGGATTATCACAAGTACATTC 1889
Query 1814 CATATTCTAAGCCTGGAAAAGTTCATGACCAGATTCTGATGTACGGTGCTCCAGAGAATC 1873
|||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1890 CATATTCTAATCCTGGAAAAGTGCATGACCAGATTCTGATGTACGGTACTCCAGAGAATC 1949
Query 1874 TCGATGACTTCTGCTTGAAGGCTCAACTGGTAAACTACATTCAGTACAGAGCTCTATTCG 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 TCGATGACTTCTGCTTGAAGGCTCAACTGGTAAACTACATTCAGTACAGAGCTCTATTCG 2009
Query 1934 AGGGCTGGAGTTCACAAATGTGGACGAAGTACACGGGTGTCTTGATCTGGAAGAACCAAA 1993
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2010 AGGGTTGGAGTTCGCAAATGTGGACGAAGTACACGGGTGTCTTGATCTGGAAGAACCAAA 2069
Query 1994 ATCCATGGACTGGTCTCAGAGGTCAGTTCTACGACCATCTTCTAGACCAAACAGCCAGTT 2053
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 2070 ATCCATGGACTGGTCTCAGAGGTCAATTCTACGATCATCTTCTCGACCAAACAGCCAGTT 2129
Query 2054 TCTACGGCTGCCGTTCCGCTGCAGAGCCAGTCCATGTCCAATTGAACCTGGCGAGTTACT 2113
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2130 TCTATGGCTGCCGTTCCGCTGCAGAGCCAGTCCATGTACAATTGAACCTGGCAAGTTACT 2189
Query 2114 TTGTTGAGGTTGTAAACACGACTTCTAAAGAGCTATCGGATGTGGCGATAGAGGCATCAG 2173
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2190 TTGTTGAGGTTGTAAACACGACTTCTAAAGAGCTGTCGGATGTGGCAATAGAGGCATCAG 2249
Query 2174 TATGGGACCTAGACGGGAACTGCCCATACTTTAAATTGTTTAAAATTGTCTCTGCACCGC 2233
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |
Sbjct 2250 TATGGGACCTAGACGGGAACTGCCCATACTATAAAGTGTTTAAAATTGTCTCTGCCCCAC 2309
Query 2234 CAAAGAAAGTTGTGAAAATATCGGAATTCAAGTACCCAAAAGCAGAAAACCCAAAGCCTG 2293
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||
Sbjct 2310 CAAAGAAAGTTGTGAAAATATCGGAATTCAAGTATCCGAAAGCAGCAAACCCAAAGCATG 2369
Query 2294 TGTATTTTCTTCTTCTCAAACTGTACAATGTCTCAGACAAAGCAGTTATATCCCGGAACT 2353
| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2370 TATATTTCCTTCTTCTCAAACTGTACACTGTCTCAGACAAAGCAGTTATATCCCGGAACT 2429
Query 2354 TCTACTGGCTTCATCTGCCTGGGAAAGATTACACACTCTTGGAGCCGTACAGGAAGAAGC 2413
|||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2430 TCTACTGGCTGCATCTGCCTGGAAAAAATTACACACTCTTGGAGCCGTACAGGAAGAAGC 2489
Query 2414 AAATACCTCTCAAGATCACTTGCAATGCAGTTATGGTTGGTCCAAAATATGAGCTGGAGA 2473
||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct 2490 AAATACCTCTCAAGATCACTTGCAATGCAGTTATGGTGGGTTCAAGATATGAGCTGGAGG 2549
Query 2474 TCAATGTCCATAACACATCTAGAGCTGACTTAGCCAAAAACGTTGTCCAGGAAGACGGAA 2533
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2550 TCAATGTTCATAACACATCTAGAGCTAACTTAGCCAAAAACGTTGTCCAGGAAGACGAAA 2609
Query 2534 AACACGATTTGGGGTTGCTCCAGAAGCTCTTCAGTAGATGTGTTGTTTCTGCAGATAGCA 2593
||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2610 AACGTGATCTGGGGTTGCTCCAGAAACTCTTTAGTAGATGTGTTGTTTCTGCAGATAGCA 2669
Query 2594 ACCGTGGTTTGAAAGTAATGGAAATGAAGGGATCTGATTCAGGAGTTGCTTTCTTCCTTC 2653
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 2670 ACCGTGGTTTGAAAGTAGTGGAAATGAAGGGATCGGATTCAGGAGTTGCTTTCTTCCTTC 2729
Query 2654 GTTTTTCAGTCCACAATGCAGAGACAGAGAAACAAGACACGAGAATTCTGCCAGTTCACT 2713
|||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 2730 GTTTCTCAGTTCACAATGCAGAGACAGAGAAACAAGATACGAGGATTCTACCAGTACACT 2789
Query 2714 ACTCAGACAACTATTTCTCACTAGTTCCAGGTGAATCAATGTCTTTTAAGATCTCATTTG 2773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2790 ACTCAGACAACTATTTCTCACTAGTTCCAGGTGAATCAATGTCTTTTAAGATCTCATTTG 2849
Query 2774 CAGCTCCTACAGGCATGAAGAAGTCTCCTCGTGTTATGCTTCAGGGATGGAACTACCCTG 2833
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2850 CAGCTCCTACAGGCATGAAGAAGTCTCCTCGTGTTATGCTTCAGGGCTGGAACTACCCTG 2909
Query 2834 ACAGGTTTAGTGTATTTGGTTGAGACAAGTT-ATGTATCGTGTTT 2877
| ||||||||||| |||||||||||| | || |||| || |||||
Sbjct 2910 ATAGGTTTAGTGTTTTTGGTTGAGACTA-TTCATGTTTCATGTTT 2953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143076121436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5