BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919650

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09026.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   230    5e-60


> AT1G09026.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 30201 Blast hits to 17322 proteins in 780 
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr1:2907124-2907279 FORWARD LENGTH=156
Length=156

 Score =  230 bits (124),  Expect = 5e-60
 Identities = 132/136 (97%), Gaps = 0/136 (0%)
 Strand=Plus/Plus

Query  1    TCTTTCACTTTGTCCTTCGCAATGGGTACATCGGATGTGGGTTGTACTTGTTGTTACCTT  60
            |||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  19   TCTTTCTCTTTGTCCTTCGCAATGGGTACATCAGATGTGGGTTGTACTGGTTGTTACCTT  78

Query  61   AAAATATTCGCGCTCATGGTTCCCGAGGCATCGCTGCCTGCTTGTGCAGGAGCTCAATGC  120
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  79   AAAATATTCGCGCTCATGGTTCCCGAGGCATCGCTGCCTGCCTGTGCAGGAGCTCAATGC  138

Query  121  CGCGATTCCATGGTTT  136
            ||||||||||||||||
Sbjct  139  CGCGATTCCATGGTTT  154



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5