BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919651

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09030.1 | Symbols: NF-YB4 | nuclear factor Y, subunit B4 | ...   721    0.0  


> AT1G09030.1 | Symbols: NF-YB4 | nuclear factor Y, subunit B4 
| chr1:2908611-2909030 REVERSE LENGTH=420
Length=420

 Score =  721 bits (390),  Expect = 0.0
 Identities = 410/420 (98%), Gaps = 0/420 (0%)
 Strand=Plus/Plus

Query  21   ATGACAGACGAAGATAGATTGTTACCAATAGCCAATGTAGGGAGACTTATGAAGCAAATC  80
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACAGACGAAGATAGATTGTTGCCAATAGCCAATGTAGGGAGACTTATGAAGCAAATC  60

Query  81   CTACCATCAAATGCAAAGATCTCAAAAGAAGCAAAACAAACAGTTCAAGAGTGTGCAACA  140
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   CTACCATCAAATGCAAAGATCTCAAAAGAAGCAAAACAAACAGTTCAAGAATGTGCAACA  120

Query  141  GAGTTCATAAGCTTTGTTACATGCGAAGCCTCGGACAAGTGCCACAGGGAGAATCGAAAG  200
            ||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct  121  GAGTTCATAAGCTTTGTTACATGCGAAGCATCAGAGAAGTGCCACAGGGAGAATCGGAAG  180

Query  201  ACGGTGAATGGAGACGACATCTGGTGGGCTCTCAGCACTCTCGGCCTCGATAACTATGCT  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ACGGTGAATGGAGACGACATCTGGTGGGCTCTCAGCACTCTCGGCCTCGATAACTATGCT  240

Query  261  GACGCCGTGGGTAGGCATCTTCACAAGTACCGTGAAGCCGAGCGAGAAAGAACTGAGCAC  320
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  241  GACGCCGTGGGTAGGCATCTTCACAAGTACCGTGAAGCCGAGAGAGAAAGAACTGAGCAC  300

Query  321  AACAAAGGTAGCAATGATAGTGGGAATGAGAAAGAACCCAACACTAGAAGTGATGTACAC  380
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  301  AACAAAGGTAGCAATGATAGTGGGAATGAGAAAGAAACCAACACTAGAAGTGATGTACAG  360

Query  381  AACCAATCGACAAAATTTATTAGAGTTGTTGAGAAGGGAAGCAGCTCCTCAGCCCGTTGA  440
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  361  AACCAATCGACAAAATTTATTAGAGTTGTTGAGAAGGGAAGCAGCTCCTCGGCCCGTTGA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5