BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919661
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09130.3 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1626 0.0
> AT1G09130.3 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr1:2939577-2942288 REVERSE
LENGTH=1338
Length=1338
Score = 1626 bits (880), Expect = 0.0
Identities = 962/1002 (96%), Gaps = 4/1002 (0%)
Strand=Plus/Plus
Query 6 AAGAGCTCCTCAACCATGGCGTCTTGCTTACAAGCATCCATGAATTCTCTGCTACCACGT 65
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 57 AAGAGCTCCTCGACCATGGCGTCTTGTTTACAAGCATCCATGAATTCTCTGCTTCCACGC 116
Query 66 TCTTCTTCTTTTTCTCCTCATCCTCCTCTATCTTTGAATTCATCCGGGAGAAGAAACTTG 125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 117 TCTTCTTCTTTTTCTCCTCATCCTCCTCTATCTTCGAATTCATCCGGGAGAAGAAACTTG 176
Query 126 AAGACTTTTCGTTACGCCTTTCGCGCCAAAGCCTCTGCTAAAATCCCTATGCCTCCGATA 185
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 177 AAGACTTTTCGTTACGCCTTTCGCGCCAAAGCCTCTGCCAAAATCCCTATGCCTCCGATA 236
Query 186 AATCCTAAGGATCCTTTCCTCTCAACGCTCGCTTCTATTGCAGCAAATTCTCCGG-AAAG 244
||||| ||||||||||||||||| ||||||||||||||||| || |||||||||| ||||
Sbjct 237 AATCCAAAGGATCCTTTCCTCTCCACGCTCGCTTCTATTGCCGCGAATTCTCCGGAAAAG 296
Query 245 ACTTCTCAATCGGCCGGTTAACGCTGATGTGCCTCCGTATCTTGACATCTTTGACTCCCC 304
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 297 -CTTCTCAATCGGCCGGTTAACGCTGATGTGCCGCCATATCTTGACATCTTTGACTCCCC 355
Query 305 TCAGCTCATGTCTTCTCCTGCTCAGGTTGAAAGATCAGTGGCTTATAATGAGCACCGACC 364
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 356 TCAGCTCATGTCTTCTCCTGCACAGGTTGAAAGATCAGTGGCTTATAACGAGCACCGACC 415
Query 365 GAGAACTCCTCCACCAGACTTGCCTTCTATGCTTCTTGACGGGAGAATTGTTTACATTGG 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 416 GAGAACTCCTCCACCAGACTTGCCATCTATGCTTCTTGACGGGAGAATTGTTTACATTGG 475
Query 425 AATGCCTCTTGTGCCGGCAGTCACAGAGCTGGTTGTCGCTGAGCTAATGTATCTTCAGTG 484
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 476 AATGCCTCTTGTGCCGGCAGTGACTGAGCTAGTTGTCGCTGAGCTAATGTATCTTCAGTG 535
Query 485 GCTAGATCCCAAGGAACCCATATACATTTACATCAATTCCACAGGGACCACTCGTGATGA 544
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 536 GCTGGATCCCAAGGAACCCATTTACATTTACATCAACTCCACAGGGACCACTCGTGATGA 595
Query 545 TGGAGAGACGGTTGGAATGGAATCAGAA-GGTTTCGCCATCTATGACTCTTTGATGCAAC 603
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 596 TGGAGAGACGGTTGGAATGGAATCAGAAGGGTTT-GCGATCTATGACTCTTTGATGCAAC 654
Query 604 TTAAAAATGAGGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTAC 663
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTAAAAACGAGGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTAC 714
Query 664 TATCAGCGGGAACCAAGGGTAACCGGTTTATGATGCCACATGCCAAAGCGATGATCCAGC 723
| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 715 TTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAGCGATGATTCAGC 774
Query 724 AACCACGTGTGCCTTCTTCTGGGTTGATGCCTGCCAGCGATGTCCTGATACGTGCCAAAG 783
|||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 775 AACCACGTGTACCTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAG 834
Query 784 AGGTCATAACAAACAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGGAATTCCG 843
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGGTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGGAATTCCG 894
Query 844 TGGAGACTGTAGCTAACGTAATGAGAAGGCCATATTACATGGATGCACCTAAAGCTAAAG 903
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 895 TGGAGACTGTAGCTAACGTAATGAGAAGGCCATATTACATGGATGCACCAAAAGCTAAAG 954
Query 904 AATTTGGAGTCATTGACAAGATTCTTTGGCGCGGTCAAGAGAAGATTATTGCGGACGTGG 963
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 955 AATTTGGAGTCATTGACAGGATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGG 1014
Query 964 TTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCG 1005
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCG 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5