BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919663 Length=586 Score E Sequences producing significant alignments: (Bits) Value AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosin... 937 0.0 > AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein | chr1:2946229-2949159 FORWARD LENGTH=1014 Length=1014 Score = 937 bits (507), Expect = 0.0 Identities = 560/586 (96%), Gaps = 1/586 (0%) Strand=Plus/Plus Query 1 TTTTCAATAAAACTTCCAACATGTTCAAGAAGTTTTGTTTGGAGGAGATTTCATCACAAA 60 |||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 199 TTTTCAAT-AAACCTCGAACATGTTTAAGAAGTTTTGTTTGGAGGAGATTTCATCACAAA 257 Query 61 ACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATTCAAGATGAGTACCCGG 120 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 258 ACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGTACCCGG 317 Query 121 GACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 GACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGT 377 Query 181 GCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 GCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTG 437 Query 241 ACGGGCCATACATGCCAACTTTGCGGCTTCTTCATCAATACCCAAATATAATGAAGAGGT 300 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 438 ACGGGCCATACATGCCAACACTGCGGCTTCTTCATCAATACCCAAATATAATGAAGAGGT 497 Query 301 TTCAAGTTGATAGAGGTGCCATAAAGTTTGTTCTCTCTGGTGCAAACATAATGTGCCCTG 360 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 498 TTCAAGTTGATAGAGGTGCCATAAAGTTTGTTCTGTCTGGTGCAAACATAATGTGTCCTG 557 Query 361 GTCTTACGTCCCCAGGAGGCGTTCTGGATGTAGAAGTCGACGCTGAAAGGCCAGTGGCCA 420 ||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 558 GTCTTACATCCCCGGGAGGCGTTCTGGATCAAGAAGTCGAGGCTGAAAGGCCAGTGGCCA 617 Query 421 TATATGCAGAAGGAAAACAACATGCCTTAGCAATAGGCTTCACCAAAATGTCTGCAAAGG 480 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 618 TATATGCAGAAGGAAAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGG 677 Query 481 ACATAAAGAGCATCAACAAAGGAATTGGAGTGGACAACATGCATTACCTCAACGACGGTC 540 ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 678 ACATAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGACGGTC 737 Query 541 TCTGGAAGATGGAGCGGCTAGATTGAGGATGATGTCAGATGTCAAT 586 ||||||||||||| || ||||| |||||| |||||| |||| ||| Sbjct 738 TCTGGAAGATGGAACGACTAGACTGAGGACAATGTCAAATGTGAAT 783 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28181356467 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5