BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919663
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosin... 937 0.0
> AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosine
transglycosylase (PUA) domain-containing protein | chr1:2946229-2949159
FORWARD LENGTH=1014
Length=1014
Score = 937 bits (507), Expect = 0.0
Identities = 560/586 (96%), Gaps = 1/586 (0%)
Strand=Plus/Plus
Query 1 TTTTCAATAAAACTTCCAACATGTTCAAGAAGTTTTGTTTGGAGGAGATTTCATCACAAA 60
|||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 199 TTTTCAAT-AAACCTCGAACATGTTTAAGAAGTTTTGTTTGGAGGAGATTTCATCACAAA 257
Query 61 ACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATTCAAGATGAGTACCCGG 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 258 ACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGTACCCGG 317
Query 121 GACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGT 377
Query 181 GCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTG 437
Query 241 ACGGGCCATACATGCCAACTTTGCGGCTTCTTCATCAATACCCAAATATAATGAAGAGGT 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 438 ACGGGCCATACATGCCAACACTGCGGCTTCTTCATCAATACCCAAATATAATGAAGAGGT 497
Query 301 TTCAAGTTGATAGAGGTGCCATAAAGTTTGTTCTCTCTGGTGCAAACATAATGTGCCCTG 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 498 TTCAAGTTGATAGAGGTGCCATAAAGTTTGTTCTGTCTGGTGCAAACATAATGTGTCCTG 557
Query 361 GTCTTACGTCCCCAGGAGGCGTTCTGGATGTAGAAGTCGACGCTGAAAGGCCAGTGGCCA 420
||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 558 GTCTTACATCCCCGGGAGGCGTTCTGGATCAAGAAGTCGAGGCTGAAAGGCCAGTGGCCA 617
Query 421 TATATGCAGAAGGAAAACAACATGCCTTAGCAATAGGCTTCACCAAAATGTCTGCAAAGG 480
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 618 TATATGCAGAAGGAAAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGG 677
Query 481 ACATAAAGAGCATCAACAAAGGAATTGGAGTGGACAACATGCATTACCTCAACGACGGTC 540
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 678 ACATAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGACGGTC 737
Query 541 TCTGGAAGATGGAGCGGCTAGATTGAGGATGATGTCAGATGTCAAT 586
||||||||||||| || ||||| |||||| |||||| |||| |||
Sbjct 738 TCTGGAAGATGGAACGACTAGACTGAGGACAATGTCAAATGTGAAT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5