BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919674
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:... 1986 0.0
AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a |... 1352 0.0
> AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:2972842-2976750
REVERSE LENGTH=1745
Length=1745
Score = 1986 bits (1075), Expect = 0.0
Identities = 1246/1326 (94%), Gaps = 21/1326 (2%)
Strand=Plus/Plus
Query 1 CTCCGATCTGAG---TTTTTAGCAATGGCG-AAATTAGTCAATAGCATCGTCTCTCTGAT 56
|||||||||||| ||||||||||||||| |||| | || |||| |||||||||| ||
Sbjct 72 CTCCGATCTGAGTTTTTTTTAGCAATGGCGAAAATGATTC-CTAGCCTCGTCTCTCTAAT 130
Query 57 TCTTATCGGTCTCGTCGCGATCGCCTCCGCGGCAGTTATCTTCGAGGAGCGCTTTGATGA 116
|||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 131 TCTTATCGGTCTTGTTGCGATCGCCTCCGCCGCAGTTATTTTCGAGGAGCGCTTTGATGA 190
Query 117 TGGATGGGA-AAGCAGATGGGTTAAATCTGAGTGGAAGAAGGATGATAACACTGCTGGGG 175
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TGGCTGGGAGAA-CAGATGGGTTAAATCTGAGTGGAAGAAGGATGATAACACTGCTGGGG 249
Query 176 AGTGGAAACACACTGCGGGAAATTGGTCTGGTGACTCTAACGATAAAGGTATCCAGACCA 235
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 250 AGTGGAAGCACACTGCGGGAAATTGGTCTGGTGACGCTAACGATAAAGGTATCCAGACCA 309
Query 236 GTGAGGACTACAGATTCTACGCCATTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACA 295
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GTGAAGACTACAGATTCTACGCCATTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACA 369
Query 296 AAACCTTAGTCTTCCAATTCTCAGTCAAGCACGAGCAAAAGCTTGACTGTGGTGGTGGCT 355
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 370 AGACCTTAGTCTTCCAATTCTCAGTCAAGCACGAGCAAAAGCTTGACTGCGGTGGTGGCT 429
Query 356 ACATGAAGCTGCTCAGTGGTGATGTTGACCAGAAGAAATTTGGTGGAGACACCCCATACA 415
|||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 430 ACATGAAGCTACTAAGTGGTGATGTTGACCAAAAGAAATTTGGTGGAGACACACCATACA 489
Query 416 GTATCATGTTTGGTCCCGATATCTGTGGCTACAGCACAAAGAAAGTGCATGCTATCCTTA 475
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GTATCATGTTTGGTCCTGATATCTGTGGCTACAGCACAAAGAAAGTGCATGCTATCCTTA 549
Query 476 CCTACAATGAAGCCAACCACCTGATCAAGAAGGATGTTCCATGTGAAACTGATCAGCTTA 535
|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 550 CCTATAATGAAGCCAACCACCTGATCAAGAAAGATGTTCCATGTGAAACTGACCAGCTCA 609
Query 536 CCCATGTGTACACCTTCATCCTCCGCCCAGATGCAACTTACAGCATTCTCATCGACAATG 595
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 610 CCCATGTGTACACATTTATCCTCCGCCCAGATGCTACTTACAGCATTCTCATCGACAATG 669
Query 596 TTGAGAAGCAAACGGGTAGCCTTTACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCA 655
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TTGAGAAACAAACTGGTAGCCTTTACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCA 729
Query 656 AGGACCCCAGCGCCAAGAAGCCTGAGGACTGGGACGACCAAGAATACATTGCTGACCCTG 715
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 730 AGGACCCCAGCGCCAAGAAGCCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTG 789
Query 716 AAGACAAGAAACCTGACGGATACGATGATATCCCAAAGGAGATCCCAGACACCGACGCTA 775
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |
Sbjct 790 AAGACAAGAAACCTGACGGTTACGATGATATCCCTAAGGAGATCCCAGACACCGACTCAA 849
Query 776 AGAAGCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCCACCATCCCCA 835
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 850 AGAAGCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCAACAATCCCCA 909
Query 836 ACCCTGAATACAATGG-TGAATGGAAGCCTAAGCAAATCAAGAACCCCAACTACAAGGGC 894
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ACCCTGAGTACA-TGGGTGAATGGAAGCCTAAGCAAATCAAGAACCCCAACTACAAGGGC 968
Query 895 AAGTGGAAGGCTCCATTGATTGATAACCCTGACTTCAAGGATGACCCAGAGCTCTATGTC 954
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 969 AAGTGGGAGGCTCCATTGATTGACAACCCTGACTTCAAGGATGACCCAGAGCTCTACGTC 1028
Query 955 TTCCCCAAGCTGAAGTATGTTGGACTCGAATTGTGGCAGGTGAAATCAGGATC-TCTGTT 1013
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1029 TTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGGTGAAATCAGGATCAT-TGTT 1087
Query 1014 TGACAATGTCTTGATCTGCGATGACCCAGACTATGCCAAGAAGTTGGCAGAGGAAACATG 1073
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1088 CGACAATGTCTTGATCTGCGATGACCCAGACTATGCCAAGAAGTTGGCAGATGAAACATG 1147
Query 1074 GGGAAAGCTCAAGGATGCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAAAGAGGA 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1148 GGGAAAGCTCAAGGATGCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGA 1207
Query 1134 AGAGGAATCCAAGGATGCACCTGCGGAATCTGATGCTGAAGAGGAACCAGAGGATGATGA 1193
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1208 AGAGGAATCCAAGGACGCACCTGCGGAATCTGATGCTGAAGACGAACCAGAGGATGATGA 1267
Query 1194 AGGAG-A--TGACTCTGATTCTGAATCTAAGACAGATGAGGAGAGCAAATCAGAAGTTAA 1250
||||| | ||| || ||||||||||||||| | || | | ||| |||||||| || ||
Sbjct 1268 AGGAGGAGATGATTCCGATTCTGAATCTAAGGCCGA-G-G-AGACCAAATCAGTAGATAG 1324
Query 1251 CGAGGAAAC-TGCCGAGAAAGACGCCACCGCTCATGATGAGCTGTAAGTGAAGGAGTTAG 1309
||||||||| | | ||||||||||||||||||||||||||||| || ||||| | ||| |
Sbjct 1325 CGAGGAAACCT-CTGAGAAAGACGCCACCGCTCATGATGAGCTATAGGTGAAAG-GTT-G 1381
Query 1310 AAGATT 1315
||||||
Sbjct 1382 AAGATT 1387
> AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a
| chr1:21089844-21092660 REVERSE LENGTH=1523
Length=1523
Score = 1352 bits (732), Expect = 0.0
Identities = 1071/1235 (87%), Gaps = 22/1235 (2%)
Strand=Plus/Plus
Query 1 CTCCGATCTGAGTTTTTAGCAATGGCGAAATTAGTCAATAGCA-TCGTCTCTCTGATTCT 59
|||||||||||||||||||||||||||||| || | || | || ||||| |||||||
Sbjct 10 CTCCGATCTGAGTTTTTAGCAATGGCGAAACTAAACCCTA-AATTCATCTCTTTGATTCT 68
Query 60 TATCGGTCTCGTCGCGATCGCCTCCGCGGCAGTTATCTTCGAGGAGCGCTTTGATGATGG 119
| ||| |||||| | ||||| ||| || | |||||||||||||||| || || |||||
Sbjct 69 TTTCGCTCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGATGG 128
Query 120 ATGGGA-AAGCAGATGGGTTAAATCTGAGTGGAAGAAGGATGATAACACTGCTGGGGAGT 178
|||||| ||| |||||||| |||||||| |||||||| |||||||| ||||||||||| |
Sbjct 129 ATGGGAGAAG-AGATGGGTAAAATCTGACTGGAAGAAAGATGATAATACTGCTGGGGAAT 187
Query 179 GGAAACACACTGCGGGAAATTGGTCTGGTGACT-CTAACGATAAAGGTATCCAGACCAGT 237
|||||||||| || ||||||||||||||||| | ||||||||||||||||||| || ||
Sbjct 188 GGAAACACACAGCTGGAAATTGGTCTGGTGA-TGCTAACGATAAAGGTATCCAAACTAGC 246
Query 238 GAGGACTACAGATTCTACGCCATTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACAAA 297
|||||||||||||||||||| || |||||||| |||||||| || || |||||||| ||
Sbjct 247 GAGGACTACAGATTCTACGCTATATCAGCTGAATTCCCTGAGTTTAGCAACAAGGATAAG 306
Query 298 ACCTTAGTCTTCCAATTCTCAGTCAAGCACGAGCAAAAGCTTGACTGTGGTGGTGGCTAC 357
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 307 ACCTTAGTCTTCCAATTCTCTGTCAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGCTAC 366
Query 358 ATGAAGCTGCTCAGTGGTGATGTTGACCAGAAGAAATTTGGTGGAGACACCCCATACAGT 417
|||||| |||| |||| |||||||||||||| |||||| || |||||||| || |||||
Sbjct 367 ATGAAGTTGCTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGC 426
Query 418 ATCATGTTTGGTCCCGATATCTGTGGCTACAGCACAAAGAAAGTGCATGCTATCCTTACC 477
|| |||||||| || ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 427 ATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCTATCCTTACT 486
Query 478 TACAAT-GAAGCCAACCACCTGATCAAGAAGGATGTTCCATGTGAAACTGATCAGCTTAC 536
|||||| ||| ||||||| ||||||||||||| || |||||||| ||||||||||||||
Sbjct 487 TACAATGGAA-CCAACCATTTGATCAAGAAGGAGGTCCCATGTGAGACTGATCAGCTTAC 545
Query 537 CCATGTGTACACCTTCATCCTCCGCCCAGATGCAACTTACAGCATTCTCATCGACAATGT 596
|| |||||||||||| ||||||| |||||||| |||||||| ||| | || || |||||
Sbjct 546 TCACGTGTACACCTTCGTCCTCCGTCCAGATGCTACTTACAGTATTTTGATTGATAATGT 605
Query 597 TGAGAAGCAAACGGGTAGCCTTTACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAA 656
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 606 TGAGAAGCAAACTGGTAGCCTTTACTCTGACTGGGATCTTCTCCCAGCAAAGAAGATTAA 665
Query 657 GGACCCCAGCGCCAAGAAGCCTGAGGACTGGGACGACCAAGAATACATTGCTGACCCTGA 716
||| || || || |||||||||||||||||||| ||| |||| |||||| | || || ||
Sbjct 666 GGATCCAAGTGCTAAGAAGCCTGAGGACTGGGATGACAAAGAGTACATTCCAGATCCAGA 725
Query 717 AGACAAGAAACCTGAC-GGATACGATGATATCCCAAAGGAGATCCCAGACACCGACGCTA 775
||||| || || | | ||||| ||||| |||||||||||||| |||||||| ||||| |
Sbjct 726 AGACACTAAGCCAG-CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAA 784
Query 776 AGAAGCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCCACCATCCCCA 835
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 785 AGAAGCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCA 844
Query 836 ACCCTGAATACAATGGTGAATGGAAGCCTAAGCAAATCAAGAACCCCAACT-ACAAGGGC 894
|||| || |||||||||||||||||||| ||| |||| ||||||||| || ||||||||
Sbjct 845 ACCCCGAGTACAATGGTGAATGGAAGCCCAAGAAAATTAAGAACCCCG-CTTACAAGGGC 903
Query 895 AAGTGGAAGGCTCCATTGATTGATAACCCTGACTTCAAGGATGACCCAGAGCTCTATGTC 954
||||||||||||||| |||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 904 AAGTGGAAGGCTCCAATGATCGACAACCCTGAATTCAAGGATGACCCAGAACTCTATGTC 963
Query 955 TTCCCCAAGCTGAAGTATGTTGGACTCGAATTGTGGCAGGTGAAATCAGGATCTCT-GTT 1013
|||||||| |||||||||||||| | || ||||||||||||||||| || || || |||
Sbjct 964 TTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGGTGAAATCTGGTTC-CTTGTT 1022
Query 1014 TGACAATGTCTTGATCTGCGATGACCCAGACTATGCCAAGAAGTTGGCAGAGGAAACATG 1073
|||||||||||| || ||||||||||||| || || ||||||||||| |||||||| ||
Sbjct 1023 CGACAATGTCTTGGTCAGCGATGACCCAGAGTACGCTAAGAAGTTGGCCGAGGAAACCTG 1082
Query 1074 GGGAAAGCTCAAGGATGCGGAGAAAGCAGC-TTTCGATGAGGCTGAGAAGAAGAAAGAGG 1132
|||||||| ||||||||||||||||||||| ||| || || ||||||||||||| |||||
Sbjct 1083 GGGAAAGCACAAGGATGCGGAGAAAGCAGCATTT-GACGAAGCTGAGAAGAAGAGAGAGG 1141
Query 1133 AAGAGGAATCCAAGGATGCACCTGCGGAATCTGATGCTGAAGAGGAACCAGA-G--GATG 1189
|||||||||| |||||||| ||||| ||||| || ||||| || ||| |||| | ||||
Sbjct 1142 AAGAGGAATCAAAGGATGCTCCTGCTGAATCCGACGCTGAGGAAGAAGCAGAAGATGATG 1201
Query 1190 A---TGAAGGAGATGACTCTGATTCTGAATCTAAG 1221
| ||||||||||||||| || |||||| |||
Sbjct 1202 ACAATGAAGGAGATGACTCAGACAATGAATCAAAG 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5