BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919677
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09245.1 | Symbols: | Plant self-incompatibility protein S1... 381 3e-105
AT1G24657.1 | Symbols: | unknown pseudogene | chr1:8737952-873... 339 2e-92
AT1G24686.1 | Symbols: | Pseudogene of AT1G09245 | chr1:874050... 327 4e-89
> AT1G09245.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:2986939-2987393 REVERSE LENGTH=455
Length=455
Score = 381 bits (206), Expect = 3e-105
Identities = 325/380 (86%), Gaps = 18/380 (5%)
Strand=Plus/Plus
Query 14 ATTTGACATGTTCCCATGTCCGAGTAACGAAA-TTAGAATTTCG-AACGAGCTTGGTCCT 71
||||||||||||||||||||| | || ||| || || || | ||||||||||||||
Sbjct 86 ATTTGACATGTTCCCATGTCC-AAAAAATAAAGTTCTAA-TTAGAAACGAGCTTGGTCCC 143
Query 72 GGTTTGGTTCTCCAATACCATTGTCATTCAAGAGATAACAATCTAGGGGTC-CAAAATTT 130
||||| ||||| |||||||||||||||||||||||| ||||||||| ||| | ||||||
Sbjct 144 GGTTTAGTTCTTCAATACCATTGTCATTCAAGAGATCACAATCTAGACGTCGC-AAATTT 202
Query 131 ACAATTCAAGGAACTA-AAACAAATCCG-TTTCGGAGACAAGTTAGGGAGAAGAACAAGG 188
||||||||| ||| || ||| |||| || ||||||||||||||||| | |||||||||
Sbjct 203 ACAATTCAATGAA-TATAAAGAAAT-CGCATTCGGAGACAAGTTAGGAAAAAGAACAAGA 260
Query 189 TGGACTTGTC-TTTTGAAACACGGCTTATACATGCGATATTAT-CAAGAATTTATAGCGT 246
|||| ||| | |||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 261 TGGAGTTG-CATTTTGAAACACGGCTTATACATGCGATATTATTCA-GAATTTATAGCAT 318
Query 247 ACA-GAATGGGCAACGTTCGTCGATGTGGTGCTATACGTCATTGGTTTGCCAGAAAAGAT 305
||| || ||| ||||||||||||||| |||||||| ||| ||||| |||| |||||||||
Sbjct 319 ACATGA-TGGCCAACGTTCGTCGATGCGGTGCTATCCGTAATTGGATTGCTAGAAAAGAT 377
Query 306 GGAATTTACCTTATGAGAAATATGCATCCGCCACCAACGTTCCATCATATGCATGGAATA 365
||||||||||||| |||||| | |||||||| || ||||| | ||| |||||||||
Sbjct 378 AGAATTTACCTTATAAGAAATGTAAATCCGCCAGCAGTGTTCCGTTATA--CATGGAATA 435
Query 366 AAACTAAGTAATGTTGATGA 385
||||||||||||||||||||
Sbjct 436 AAACTAAGTAATGTTGATGA 455
> AT1G24657.1 | Symbols: | unknown pseudogene | chr1:8737952-8738365
REVERSE LENGTH=414
Length=414
Score = 339 bits (183), Expect = 2e-92
Identities = 294/346 (85%), Gaps = 14/346 (4%)
Strand=Plus/Plus
Query 37 GTAACGA-AATTAG-AATT-TCGAACGAGCTTGGTCCTGGTTTGGTTCTCCAATACCATT 93
||||| | |||| | |||| | ||||||||||||||| |||||||||||||| || ||||
Sbjct 77 GTAAC-ACAATT-GAAATTAT-GAACGAGCTTGGTCCCGGTTTGGTTCTCCAGTATCATT 133
Query 94 GTCATTCAAGAGATAACAATCTAGGGGT-CCAAAATTTACAATTCAAGGAACTAAAACAA 152
||||||||||||| ||||||||| || | ||||||| |||| |||||| ||||||||
Sbjct 134 GTCATTCAAGAGACGACAATCTAGACGTAGC-AAATTTATAATTTAAGGAAATAAAACAA 192
Query 153 ATCCGTTTCGGAGACAAGTTAGGGAGAAGAACAAGGTGGACTTGTCTTTTGAAACACGGC 212
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 193 ATCCGTTTCGGAGACAAGCTAGGAAGAAGAACAAGATGGACTTGTCTTTTGAAACACGGC 252
Query 213 TTATACATGCGATATTATCAAGAATTTATAGCGTACAGAATGGGCAACGTTCGTC-GATG 271
|||||||||||||||||| ||||||| ||||| || ||| |||||| || | | ||||
Sbjct 253 TTATACATGCGATATTATAAAGAATTCATAGCATATAGAGCAGGCAACATT-GACCGATG 311
Query 272 TGGTGCTATACGTCATTGGTTTGCCAGAAAAGATGGAATTTACCTTATGAGAAATATGCA 331
||||||| | |||| |||| ||| ||||| ||||||||||||||| |||| || | |
Sbjct 312 TGGTGCTCTGCGTCGTTGGGTTGTTAGAAATGATGGAATTTACCTTGTGAGGGATC-GAA 370
Query 332 -TCCGCCACCAACGTTCCATCATATGCATGGAATAAAACTAAGTAA 376
||| | ||||| |||||||||| |||||||||||||||||||||
Sbjct 371 ATCCTCAACCAAAGTTCCATCAT--GCATGGAATAAAACTAAGTAA 414
> AT1G24686.1 | Symbols: | Pseudogene of AT1G09245 | chr1:8740506-8740919
REVERSE LENGTH=414
Length=414
Score = 327 bits (177), Expect = 4e-89
Identities = 292/346 (84%), Gaps = 14/346 (4%)
Strand=Plus/Plus
Query 37 GTAACGA-AATTAG-AATT-TCGAACGAGCTTGGTCCTGGTTTGGTTCTCCAATACCATT 93
||||| | |||| | |||| | ||| || |||||||| |||||||||||| | || |||
Sbjct 77 GTAAC-ACAATT-GAAATTAT-GAATGATCTTGGTCCCGGTTTGGTTCTCTAGTATCATC 133
Query 94 GTCATTCAAGAGATAACAATCTAGGGGTC-CAAAATTTACAATTCAAGGAACTAAAACAA 152
||||||||| ||| ||||| ||| ||| | ||||||||||||||||||||||||||||
Sbjct 134 GTCATTCAAAAGACGACAATTTAGACGTCGC-AAATTTACAATTCAAGGAACTAAAACAA 192
Query 153 ATCCGTTTCGGAGACAAGTTAGGGAGAAGAACAAGGTGGACTTGTCTTTTGAAACACGGC 212
|||||||||||||||| ||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 193 ATCCGTTTCGGAGACATGTTTGGAAGAAGGACAAGATGGACTTGTCTTTTGAAACACGGC 252
Query 213 TTATACATGCGATATTATCAAGAATTTATAGCGTACAGAATGGGCAACGTTCG-TCGATG 271
|||||||||||||||||| |||| ||| |||| || ||| | |||| || | ||||||
Sbjct 253 TTATACATGCGATATTATAAAGATTTTGTAGCATATAGAGCAGCCAACATT-GATCGATG 311
Query 272 TGGTGCTATACGTCATTGGTTTGCCAGAAAAGATGGAATTTACCTTATGAGAAATATGCA 331
|| |||| |||||| || | |||| ||||| ||||||||||||||| ||||||||| | |
Sbjct 312 TGATGCTCTACGTCGTTAGATTGCTAGAAATGATGGAATTTACCTTGTGAGAAATA-GAA 370
Query 332 -TCCGCCACCAACGTTCCATCATATGCATGGAATAAAACTAAGTAA 376
||| | ||||| |||||||||| |||||||||||||||||||||
Sbjct 371 ATCCTCAACCAAAGTTCCATCAT--GCATGGAATAAAACTAAGTAA 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21665399819
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5