BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919679
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09245.1 | Symbols: | Plant self-incompatibility protein S1... 438 2e-122
AT1G66534.1 | Symbols: | unknown pseudogene | chr1:24823254-24... 409 2e-113
AT1G24686.1 | Symbols: | Pseudogene of AT1G09245 | chr1:874050... 291 7e-78
AT1G24657.1 | Symbols: | unknown pseudogene | chr1:8737952-873... 279 2e-74
> AT1G09245.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr1:2986939-2987393 REVERSE LENGTH=455
Length=455
Score = 438 bits (237), Expect = 2e-122
Identities = 401/474 (85%), Gaps = 35/474 (7%)
Strand=Plus/Plus
Query 105 AAACTGGAGT-TCATATTACTCGAAAAATATAATGAATCGTTTTATAA-TTTTATGTGTG 162
|||||||||| ||| ||||||| || ||||||||||||||||| |||||||| ||
Sbjct 1 AAACTGGAGTCTCAAATTACTC-----TTA-AATGAATCGTTTTATAATTTTTATGTTTG 54
Query 163 TCGTTGCGACGTGTTTAAGATTGAATGTAGCATTTTTTGACATGTTTCCATGTCCGAAAA 222
| |||| || | ||| |||||||||||||| ||||||||||| |||||||| ||||
Sbjct 55 TTGTTGTAACATATTTTGGATTGAATGTAGCA---TTTGACATGTTCCCATGTCCAAAAA 111
Query 223 ACAAAATTTTCATTACG-AACGAGCTTGGTTCCGGTTTGGTTCTTCAATACCATTGTCAT 281
| ||| || | |||| | |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 112 ATAAAGTTCTAATTA-GAAACGAGCTTGGTCCCGGTTTAGTTCTTCAATACCATTGTCAT 170
Query 282 TCAAGAGA-CAACAATTTAGACGTCGCAAATTTACAATTCAACGAATCA-AAGGAAATCG 339
|||||||| | ||||| ||||||||||||||||||||||||| |||| | || |||||||
Sbjct 171 TCAAGAGATC-ACAATCTAGACGTCGCAAATTTACAATTCAATGAAT-ATAAAGAAATCG 228
Query 340 TATTCGCAGACAAGTTAGGAAGAAGGACAAGATGGACTTGTC-TTTTGAAACACGGCTTA 398
||||| |||||||||||||| ||| |||||||||| ||| | |||||||||||||||||
Sbjct 229 CATTCGGAGACAAGTTAGGAAAAAGAACAAGATGGAGTTG-CATTTTGAAACACGGCTTA 287
Query 399 TACATGCGATATTATTCAGAATTTATAGCATACA-GAATGGCTAACGTTCGTCGATATGG 457
|||||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||
Sbjct 288 TACATGCGATATTATTCAGAATTTATAGCATACATGA-TGGCCAACGTTCGTCGATGCGG 346
Query 458 TGCT-TACCGTGAAT-GGATTGCCAGAAAAGATGGAATTTATGTTATAAGAAATCG-AAA 514
|||| | |||| ||| ||||||| ||||||||| ||||||| ||||||||||| | |||
Sbjct 347 TGCTAT-CCGT-AATTGGATTGCTAGAAAAGATAGAATTTACCTTATAAGAAAT-GTAAA 403
Query 515 TCCGCCACCAACGTTCCATCATATACATGT--TA----TAAGTAATGTTGATGA 562
||||||| || ||||| | |||||||| || ||||||||||||||||
Sbjct 404 TCCGCCAGCAGTGTTCCGT--TATACATGGAATAAAACTAAGTAATGTTGATGA 455
> AT1G66534.1 | Symbols: | unknown pseudogene | chr1:24823254-24823667
FORWARD LENGTH=414
Length=414
Score = 409 bits (221), Expect = 2e-113
Identities = 338/394 (86%), Gaps = 10/394 (3%)
Strand=Plus/Plus
Query 147 TATAATTTT-ATGTGTGTCGTTGCGACGTGTTTAAGATTGAATGTAGCATTTTTTGACAT 205
||||||||| |||| ||| |||||||||| ||| |||||||||||| | ||||| ||
Sbjct 6 TATAATTTTCATGTTTGTAGTTGCGACGTATTTCGGATTGAATGTAG-A--ATTTGAAAT 62
Query 206 GTTTCCATGTCCGAAAAACAAAATTTTCATTACGAACGAGCTTGGTTCCGGTTTGGTTCT 265
||||||||||||| |||| | ||| | |||||||||||||||||| |||||||||||||
Sbjct 63 GTTTCCATGTCCGTCAAACTATATTCTAATTACGAACGAGCTTGGTCCCGGTTTGGTTCT 122
Query 266 TCAATACCATTGTCATTCAAGAGACAACAATTTAGACGTCGCAAATTTACAATTCAACG- 324
||||| |||||||| |||||||||||||||||| | ||| ||||||||| ||||| |
Sbjct 123 ACAATAGCATTGTCACTCAAGAGACAACAATTTAAATGTCAAAAATTTACAGTTCAATGA 182
Query 325 AATCAAAGGAAA-TCGTATTCGCAGACAAGTTAGGAAGAAGGACAAGATGGACTTGTCTT 383
||| ||| ||| |||| |||||||| ||| |||||| ||||||||||||||||||| ||
Sbjct 183 AAT-AAAAAAAATTCGT-TTCGCAGATAAGATAGGAAAAAGGACAAGATGGACTTGTGTT 240
Query 384 TTGAAACACGGCTTATACATGCGATATTATTCAGAATTTATAGCATACAGAATGGCTAAC 443
|||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 241 TTGAAACACGACTTATACATGCGATATTATTCAGAATTTATTGGATACAGAATGGCCAAT 300
Query 444 GTTCGTCGATATGGTGCTT-ACCGTGAATGGATTGCCAGAAAAGATGGAATTTATGTTAT 502
|||||||||| |||||||| || || | |||||||||||||||| ||||||||| |||
Sbjct 301 GTTCGTCGATGTGGTGCTTCAC-GTCAGTGGATTGCCAGAAAAGCTGGAATTTACCTTAC 359
Query 503 AAGAAATCGAAATCCGCCACCAACGTTCCATCAT 536
|||||||| |||||| |||||| |||||| |||
Sbjct 360 AAGAAATCAAAATCCACCACCAGTGTTCCAACAT 393
> AT1G24686.1 | Symbols: | Pseudogene of AT1G09245 | chr1:8740506-8740919
REVERSE LENGTH=414
Length=414
Score = 291 bits (157), Expect = 7e-78
Identities = 329/409 (80%), Gaps = 24/409 (6%)
Strand=Plus/Plus
Query 136 ATGAATCGTTTTATAA-TTTTATGTGT-GTCGTTGCGACGTGTTTAAGATTGAATGTAGC 193
|||||||||||||||| |||||||| | || |||||||||| ||| ||||| |||| |
Sbjct 1 ATGAATCGTTTTATAATTTTTATGT-TAGTTGTTGCGACGTATTTTGGATTGCTTGTATC 59
Query 194 ATTTTTTGACATGTTTCCATGTCCGAAAAACAAAATTTTCATTACGAACGAGCTTGGTTC 253
| ||||| | | | | | || |||| |||| |||| ||| || |||||| |
Sbjct 60 A-GTTTTGTC-T-TGT--A--AACG--TAACACAATTGAAATTATGAATGATCTTGGTCC 110
Query 254 CGGTTTGGTTCTTC-AATACCATTGTCATTCAAGAGACAACAATTTAGACGTCGCAAATT 312
||||||||||| || | || ||| ||||||||| |||| |||||||||||||||||||||
Sbjct 111 CGGTTTGGTTC-TCTAGTATCATCGTCATTCAAAAGACGACAATTTAGACGTCGCAAATT 169
Query 313 TACAATTCAACGAA-TCAAAGGAAATC-GTATTCGCAGACAAGTTAGGAAGAAGGACAAG 370
|||||||||| ||| | ||| ||||| || |||| ||||| ||| ||||||||||||||
Sbjct 170 TACAATTCAAGGAACTAAAAC-AAATCCGT-TTCGGAGACATGTTTGGAAGAAGGACAAG 227
Query 371 ATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATTCAGAATTTATAGCATA 430
||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 228 ATGGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATAAAGATTTTGTAGCATA 287
Query 431 CAGAATGGCTAACGTTCG-TCGATATGGTGCT-TACCGT-GAATGGATTGCCAGAAAAGA 487
||| || ||| || | ||||| || |||| ||| || | | |||||| ||||| ||
Sbjct 288 TAGAGCAGCCAACATT-GATCGATGTGATGCTCTAC-GTCGT-TAGATTGCTAGAAATGA 344
Query 488 TGGAATTTATGTTATAAGAAATCGAAATCCGCCACCAACGTTCCATCAT 536
||||||||| || | |||||| ||||||| | ||||| ||||||||||
Sbjct 345 TGGAATTTACCTTGTGAGAAATAGAAATCCTCAACCAAAGTTCCATCAT 393
> AT1G24657.1 | Symbols: | unknown pseudogene | chr1:8737952-8738365
REVERSE LENGTH=414
Length=414
Score = 279 bits (151), Expect = 2e-74
Identities = 327/409 (80%), Gaps = 24/409 (6%)
Strand=Plus/Plus
Query 136 ATGAATCGTTTTATAA-TTTTATGTGTGTCGTTGCGACGTGTTTAAGATTGAATGTAGCA 194
|||||||||||||||| |||||||| ||| ||||||||| ||| ||||| |||| ||
Sbjct 1 ATGAATCGTTTTATAATTTTTATGTTTGTTATTGCGACGTATTTTGGATTGCTTGTATCA 60
Query 195 TTTTTTGACATGTTTCCATGTCCGAAAAACAAAATTTTCATTACGAACGAGCTTGGTTCC 254
|| || | | | | | || |||| |||| |||| ||||||||||||| ||
Sbjct 61 -GTTCTGTC-T-TGT--A--AACG--TAACACAATTGAAATTATGAACGAGCTTGGTCCC 111
Query 255 GGTTTGGTTCTTCAATACCATTGTCATTCAAGAGACAACAATTTAGACGTCGCAAATTTA 314
||||||||||| || || |||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 112 GGTTTGGTTCTCCAGTATCATTGTCATTCAAGAGACGACAATCTAGACGTAGCAAATTTA 171
Query 315 CAATTCAACG-AATCAAAGGAAAT-CGTATTCGCAGACAAGTTAGGAAGAAGGACAAGAT 372
|||| || | ||| ||| |||| ||| |||| ||||||| |||||||||| |||||||
Sbjct 172 TAATTTAAGGAAAT-AAAACAAATCCGT-TTCGGAGACAAGCTAGGAAGAAGAACAAGAT 229
Query 373 GGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATTCAGAATTTATAGCATACA 432
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 230 GGACTTGTCTTTTGAAACACGGCTTATACATGCGATATTATAAAGAATTCATAGCATATA 289
Query 433 GA--ATGGCTAACGTTCGTC-GATATGGTGCT-TACCGT-GAATGGATTGCCAGAAAAGA 487
|| | ||| ||| || | | ||| ||||||| | | || | ||| ||| ||||| ||
Sbjct 290 GAGCA-GGC-AACATT-GACCGATGTGGTGCTCTGC-GTCGT-TGGGTTGTTAGAAATGA 344
Query 488 TGGAATTTATGTTATAAGAAATCGAAATCCGCCACCAACGTTCCATCAT 536
||||||||| || | || |||||||||| | ||||| ||||||||||
Sbjct 345 TGGAATTTACCTTGTGAGGGATCGAAATCCTCAACCAAAGTTCCATCAT 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5