BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919681
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09270.1 | Symbols: IMPA-4 | importin alpha isoform 4 | chr1... 2691 0.0
> AT1G09270.1 | Symbols: IMPA-4 | importin alpha isoform 4 | chr1:2994369-2998222
FORWARD LENGTH=2143
Length=2143
Score = 2691 bits (1457), Expect = 0.0
Identities = 1596/1663 (96%), Gaps = 9/1663 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAGACGTTAACAAAGGATGTCGCTGAGGCCGAGCACACGCGCGGAGCTAAGGAAG 60
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGAAAGAGATTTTAACAAACGATGTCGCTGAGGCCGAGCACACGCGCGGAGCTAAGGAAG 176
Query 61 AAGATATACAAGACAGGGGTCGATGCCGATGAGGCGAGGCGGAGGAGAGAGGACAATCTC 120
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 177 AAGATATACAAGACAGGCGTCGATGCCGATGAGGCCAGGCGGAGGAGAGAGGACAATCTC 236
Query 121 GTCGAGATTCGGAAAAACAAGCGTGAGGATAGTCTCCTCAAGAAGCGTCGTGAAGGAATG 180
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 GTCGAGATTAGGAAAAACAAGCGTGAGGATAGTCTTCTCAAGAAGCGTCGTGAAGGAATG 296
Query 181 ATGCTTCAGCAGCA---GCCTCTCGGAGCTGGCCTTGACGGTCTCCAGAACGCTGCCGCC 237
|||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 297 ATGCTTCAGCAGCAGCTGCCTCTCGGAGCTGGCCTTGATGGTCCCCAGACCGCTGCCGCC 356
Query 238 GTTGAGAAACGATTAGAAGGTATCCCAATGATGGTACAAGGTGTTTATTCTGATGATCCT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTGAGAAACGATTAGAAGGTATCCCAATGATGGTACAAGGTGTTTATTCTGATGATCCT 416
Query 298 CAAGCTCAGCTAGAAGCCACTACTCAATTTAGAAAGTTGTTATCCATAGAGCGTAGTCCT 357
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 417 CAAGCTCAGCTAGAAGCGACTACCCAATTTAGAAAGTTGTTATCTATAGAGCGTAGTCCT 476
Query 358 CCAATTGACGAAGTGATCACAGCTGGGGTTGTCCCACGATTTGTGGAGTTTCTTGGAAGG 417
|||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 477 CCAATTGATGAAGTGATCAAAGCTGGGGTTATCCCTCGATTTGTGGAGTTTCTTGGAAGG 536
Query 418 CAAGACCATCCCCAATTGCAGTTTGAGGCTGCGTGGGCTTTGACCAATGTTGCGTCAGGA 477
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 CATGACCATCCTCAATTGCAGTTTGAGGCTGCATGGGCTTTGACCAATGTTGCGTCAGGA 596
Query 478 ACATCAGATCATACTCGGGTTGTAATTGAACAGGGGGCGGTTCCTATCTTCGTTCAGCTT 537
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 597 ACATCAGATCATACTCGGGTTGTAATCGAACAGGGGGCGGTTCCTATCTTCGTTAAGCTT 656
Query 538 CTTAGC-TCTGCAAGTGATGACGTTCGAGAGCAGGCTGTGTGGGCCTTGGGAAATGTTGC 596
|||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 CTTA-CATCTGCTAGTGATGACGTTCGAGAGCAGGCGGTGTGGGCCTTGGGAAATGTTGC 715
Query 597 TGGGGACTCTCCAAACTGCAGGAATCTTGTTCTCAACTATGGGGCTCTTGAGCCATTGCT 656
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 TGGGGACTCTCCAAACTGCAGGAATCTTGTTCTCAACTATGGGGCCCTTGAGCCATTGCT 775
Query 657 GGCTCAGTTAAATGAAAATTCTAAGTTGTCCATGCTAAGAAATGCTACATGGACCTTGTC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGCTCAGTTAAATGAAAATTCTAAGTTGTCCATGCTAAGAAATGCTACATGGACCTTGTC 835
Query 717 CAACTTTTGCCGTGGTAAACCACCAACACCATTTGAACAGGTGAAGCCTGCGTTGCCAGT 776
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 CAACTTTTGTCGTGGTAAACCACCAACACCATTTGAACAGGTGAAGCCTGCGTTGCCAAT 895
Query 777 TCTTCGGCAGCTTATCTATCTGAATGATGAAGAAGTTCTCACCGATGCCTGCTGGGCTCT 836
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 896 TCTTCGGCAGCTTATCTATCTGAATGATGAAGAGGTTCTCACTGATGCTTGCTGGGCTCT 955
Query 837 CTCCTACCTTTCAGATGGCCCCAATGATAAGATTCAGGCTGTGATTCAGGCAGGTGTCTG 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 CTCCTACCTTTCAGATGGCCCCAATGATAAGATTCAGGCTGTGATTGAGGCAGGTGTCTG 1015
Query 897 TCCACGACTTGTGGAGCTTCTGGGTCATCAATCACCCACGGTTCTCATTCCTGCCCTTCG 956
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct 1016 TCCACGACTTGTGGAGCTTTTGGGTCATCAATCACCTACGGTTCTCATTCCTGCTCTTCG 1075
Query 957 AACTGTTGGGAACATCGTAACTGGTGATGATTCTCAGACACAGTTTATAATTGATAGTGG 1016
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1076 AACTGTTGGGAACATCGTAACTGGTGATGACTCTCAGACACAGTTTATAATTGAGAGTGG 1135
Query 1017 CGTACTTCCACACCTTTATAATTTGCTTACGCAAAATCACAAGAAAAGTATTAAAAAAGA 1076
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1136 CGTACTACCACACCTTTATAATTTGCTGACGCAAAATCACAAGAAAAGTATAAAAAAAGA 1195
Query 1077 AGCTTGTTGGACTATCTCGAATATTACTGCTGGGAATAAAGTTCAGATAGAGGCTGTGGT 1136
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 AGCTTGTTGGACTATCTCGAATATTACTGCTGGGAATAAACTTCAGATAGAGGCTGTGGT 1255
Query 1137 TGGCGCTGGAATAATCCTCCCTCTTGTGCACTTGCTCCAAAACGCGGAGTTCGATATAAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGGCGCTGGAATAATCCTCCCTCTTGTGCACTTGCTCCAAAACGCGGAGTTCGATATAAA 1315
Query 1197 GAAGGAAGCTGCTTGGGCTATTTCCAATGCCACCTCAGGAGGGTCTCATGAGCAGATTCA 1256
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1316 GAAGGAAGCTGCTTGGGCTATTTCCAATGCCACATCAGGAGGGTCACATGAGCAGATTCA 1375
Query 1257 ATATTTGGTGACCCAAGGCTGTATCAAACCACTTTGTGATCTTCTAATCTGCCCTGATCC 1316
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ATATTTGGTGACCCAAGGCTGCATCAAACCACTTTGTGATCTTCTAATCTGCCCTGATCC 1435
Query 1317 AAGGATTGTGACAGTGTGCCTCGAGGGGCTTGAAAACATTCTCAAGGTTGGTGAGGCTGA 1376
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1436 AAGGATCGTGACAGTGTGCCTCGAGGGTCTTGAAAACATTCTCAAGGTTGGTGAGGCTGA 1495
Query 1377 CAAGGAGATGGGATTAAACGGTGGGGTGAATCTCTATGCTCAAATAATAGAAGAATCTGA 1436
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CAAGGAAATGGGATTAAACAGTGGGGTGAATCTCTATGCTCAAATAATAGAAGAATCTGA 1555
Query 1437 TGGGTTGGACAAAGTCGAAAACCTTCAATCCCATGATAACAACGAGATATATGAGAAGGC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TGGGTTGGACAAAGTCGAAAACCTTCAATCCCATGATAACAACGAGATATATGAGAAGGC 1615
Query 1497 CGTTAAGATATTGGAGAGATATTGGGCTGAAGAAGAGGAAGAGCAGATTCTGCAGGACGG 1556
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1616 CGTTAAGATATTGGAGAGATATTGGGCTGAAGAAGAGGAAGAACAGATTCTGCAGGACGG 1675
Query 1557 CGGGAATGAAAATTCACAACAGGCCTTCAATTTTGGGAACAACCAGCCCGCTGCTCCCCC 1616
||||||||| |||||||||||||| ||||||||||||||||| | || |||||||||
Sbjct 1676 CGGGAATGACAATTCACAACAGGCTTTCAATTTTGGGAACAATC--CC-GCTGCTCCCGT 1732
Query 1617 AGGCGGATTCCAATTTGGCTGAAAA-GGTATACAGTAGTACAA 1658
|| |||||| |||||| ||||||| |||||||||||||||||
Sbjct 1733 TGGTGGATTCAAATTTGCCTGAAAAAGGTATACAGTAGTACAA 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81927289440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5