BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919690

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09360.1 | Symbols:  | Plant invertase/pectin methylesterase...   904    0.0  


> AT1G09360.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:3021802-3022368 FORWARD 
LENGTH=567
Length=567

 Score =  904 bits (489),  Expect = 0.0
 Identities = 541/567 (95%), Gaps = 0/567 (0%)
 Strand=Plus/Plus

Query  23   ATGATCGTTCTTGTTCTTTATATTTTTACTCCTCACATTGAAGCAATCAAAGCCGATGGA  82
            ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct  1    ATGATCGTTCTTGTTCTTTATATTTTTACTCCTCACATTGAAGGAGTCGAAGCCGATGGA  60

Query  83   GCAACAGAAGCACTGATCAATAGTATCTGCATCGAAAACGAAGATTATGGATTTTGCAAT  142
             ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  61   CCAACAGAAGCACTGATCAATAGTATTTGCATAGAAAACGAAGATTATGGATTTTGCAAT  120

Query  143  AAAATCATCCATGAAAAATTGAAGGCACCAACGGCTACCATCAAAGAACTCACCAGTCTG  202
            |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| 
Sbjct  121  AAAATCATCCATGAAAAATTGAAGACACCAACGGCTACTATCAAAGAACTCACGAGTCTC  180

Query  203  ATAATATACACCACTATGGATCACGCCAGTGATACTTACATTTTCATCGATAACATCCTC  262
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATAATATACACCACTATGGCTCACGCCAGTGATACTTACATTTTCATCGATAACATCCTC  240

Query  263  CGCGAATGGCCTGTCCCTAAGGAGACAACTGGTCTCAAGACTTGTCATGAAGTTTATAAT  322
            ||| ||||||||| |||||||||||| | |||||||||||||||||||| ||||||||| 
Sbjct  241  CGCAAATGGCCTGGCCCTAAGGAGACGAGTGGTCTCAAGACTTGTCATGCAGTTTATAAG  300

Query  323  AGAGAGACAAATAGTTTCTTAGAAATTCGATTTCTATTTTCAAAAGGAGAGTACGAACGT  382
            |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct  301  AGAGAGACCAATAGTTTCTTAGAAATTCGCTTTCTATTTTCAAAAGGAGAGTACGAACTT  360

Query  383  ATGGGTGTAGCCATTTTGTCCACAGCCAAGATCTTAGAAGATTGTAGGGGCGATTTTCTT  442
            |||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  361  ATGGATGAAGCCATTTTGTCCACAGCCAAGATCTTAGAAGAGTGTAGGGGCGATTTTCTT  420

Query  443  ATTCCTCCTTACAAGGAGCCTCTGATTGAGAAGAAGAGAGTTATGAGAATATTGATCACC  502
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  421  ATTCCTCCTTACAAGGAGCCTCTGCTTGAGAAGAAGAGAGTTATGAGAATATTGATCACC  480

Query  503  ATGTCTGCTGTTTCTGGACATATGATCAAAAATGAGAAGGCTTCCTTGATTAGCTCAGTA  562
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  481  ATGTCTGCTGTTTCTGGACATATGGTCAAAAATGAGAAGGCTTCCTTGATTAGCTCAGTA  540

Query  563  GTTACTGCGCAGTTTTTCAATATTTGA  589
            |||||||| ||||||||||||||||||
Sbjct  541  GTTACTGCCCAGTTTTTCAATATTTGA  567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5