BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919693
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09380.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1892 0.0
> AT1G09380.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:3026135-3029549 REVERSE LENGTH=1568
Length=1568
Score = 1892 bits (1024), Expect = 0.0
Identities = 1113/1155 (96%), Gaps = 10/1155 (1%)
Strand=Plus/Plus
Query 1 AATAGAATTAAA-AGA--GAGAGATGGCTAAATCAGATATGCTGCCGTTCTTGGCGATGG 57
|||| ||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 205 AATAAAATAAAAGAGAGTGAGAGATGGCTAAATCAGATATGTTGCCGTTCTTGGCGATGG 264
Query 58 TGTTGGTGCAAATCGGCTACGCAGGCATGAACATTACGTCGAAGATGGCTATGGAGGCCG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TGTTGGTGCAAATCGGCTACGCAGGCATGAACATTACGTCGAAGATGGCTATGGAGGCCG 324
Query 118 GCATGAAGCCTCTCATTCTGGTCGCTTATCGCCAGATATTTGCCACTATCGCCACTTTTC 177
| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 325 GTATGAAGCCACTCATCCTGGTCGCTTATCGTCAGATATTTGCCACTATCGCCACTTTTC 384
Query 178 CGGTCGCATTTTTTCTCGAACGGAAGACAAGACCAAAGATCACACTTAGGGTTCTTGTTC 237
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 385 CGGTCGCATTTTTTCTCGAACGGAAGACAAGACCGAAGATCACACTTAGGATTCTTGTCC 444
Query 238 AAGTCTTCTTCTGCTCCATTACTGGTGCGACTGGAAACCAAGTGCTATACTTCATAGGAC 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 445 AAGTCTTCTTCTGCTCCATTACTGGTGCGACTGGAAACCAAGTGCTATATTTCGTAGGAC 504
Query 298 TTCAGAATTCATCTCCGACCATTGCTTGTGCCTTAACTAATCTCTTACCAGCGGTCACTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TTCAGAATTCATCTCCGACCATTGCTTGTGCCTTAACTAATCTCTTACCAGCGGTCACTT 564
Query 358 TCCTCCTCGCCGCAATATTCAGACAAGAAACCGTAGGGATCAAGAAGGCATCAGGACAAG 417
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 565 TCCTCCTCGCCGCAATATTCAGACAAGAAACCGTGGGGATCAAGAAGGCATCAGGACAAG 624
Query 418 CCAAAGTGATAGGGACGCTAGTATGTGTGATCGGAGCCATGGTTCTCTCCTTTTACCATG 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 625 CCAAAGTGATAGGGACGCTAGTATGTGTGATCGGAGCCATGGTTCTCTCCTTCTACCATG 684
Query 478 GTCACACCATTGGCATTGGAGAGTCCAAGATTCATTGGGCCTATGCTGAAAACATCAC-A 536
|||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| |
Sbjct 685 GTCACACCATCGGCATTGGAGAATCCAAGATCCATTGGGCCTACGCTGAAAACATCACGA 744
Query 537 AGACAGGGTTCCAGTTCTGCCCATTCTAACTTCTTCTTGGGACCTTTTCTTATTATGGCT 596
| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 745 A-ACATGGTTCCAGTTCTGGCCATTCTAATTTCTTCTTGGGACCTTTTCTTATTATGGCT 803
Query 597 GCTGCCGTTTCTTGGGCCGCTTGGTTCATTATCCAGACGAAGATGAGTGAAACATTTGCA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GCTGCCGTTTCTTGGGCCGCTTGGTTCATTATCCAGACGAAGATGAGTGAAACATTTGCA 863
Query 657 GCACCATACACGAGCACACTTCTAATGTGTTTGATGGGAAGTATCCAATGTGGAGCCATT 716
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 864 GCACCGTACACGAGCACACTACTAATGTGTTTGATGGGAAGTATCCAATGTGGAGCCATT 923
Query 717 GCTTTGATCTCCGATCATA-AACTCTCTGATTGGTCTCTCAGCTCTCCTCTCCGCTTCAT 775
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 924 GCTTTGATCTCCGATCATACAA-TCTCTGATTGGTCTCTCAGCTCTCCTCTCCGCTTCAT 982
Query 776 ATCCGCCCTATACGCCGGAGTGGTGGCGTCTGCGTTAGCGTTCTGCCTAATGTCATGGGC 835
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 983 ATCCGCCCTTTATGCCGGAGTGGTGGCGTCTGCGTTAGCTTTCTGCCTAATGTCATGGGC 1042
Query 836 TATGCAGAGGAAAGGTCCTCTGTACGTCTCTGTTTTCAGCCCTTTACTTCTGGTAGTAGT 895
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1043 TATGCAGAGGAAAGGTCCTCTGTACGTCTCTGTTTTCAGCCCTTTACTTCTCGTAGTTGT 1102
Query 896 CGCCATTTTCAGCTGGGCTCTTCTTGAAGAGAAACTCTACACCGGCACGTTTATGGGATC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CGCCATTTTCAGCTGGGCTCTTCTTGAAGAGAAACTCTACACCGGCACGTTTATGGGATC 1162
Query 956 AGCACTTGTGGTTATTGGTCTCTATGGCGTATTGTGGGGGAAAGACAGAGAGGTGAGTGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AGCACTTGTGGTTATTGGTCTCTATGGCGTATTGTGGGGGAAAGACAGAGAGGTGAGTGA 1222
Query 1016 GAAGGAAGAAGAAAGGGAGAAGGTGAAACAACAACAACGTAGTAAAGGCAAGAGTGAAAG 1075
|||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||
Sbjct 1223 GAAGGAAGAAGAAAGGGAGAAGGTGAAACAACAA-AACC-A-TAAAGTCAAGAGTGAAAG 1279
Query 1076 TAATGAAGATATTGAATCGAGATTACCGGTCGCAAGTAGTGGAAATGGTTCCACAAGGTC 1135
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1280 TAATGAAGATATTGAATCGAGATTACCGGTAGCAAGTAGTGGAAATGGTTCCACAAGGTC 1339
Query 1136 TATATCGCCTTAAAA 1150
|| ||||||||||||
Sbjct 1340 TACATCGCCTTAAAA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5