BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919695
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09400.1 | Symbols: | FMN-linked oxidoreductases superfamil... 1596 0.0
> AT1G09400.1 | Symbols: | FMN-linked oxidoreductases superfamily
protein | chr1:3033512-3035036 REVERSE LENGTH=1182
Length=1182
Score = 1596 bits (864), Expect = 0.0
Identities = 1019/1096 (93%), Gaps = 1/1096 (0%)
Strand=Plus/Plus
Query 1 TTCCCCTTCTCACTCCATTCTCAATGAAAAACTTCAATCTTACTCACAGAATAGTTATGG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 TTCCCCTTCTCACTCCATTCTCAATGAAAAACTTCAATCTTACTCACAGAATCGTTATGG 80
Query 61 CGCCGATGGCGAGAATGAGATCATACGGTAACGTTCCACAACCTCACGTCGCCTTGTATT 120
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 81 CGCCAATGGCGAGAATGAGATCATACGGTAACATTCCACAACCTCACGTCGCCTTGTATT 140
Query 121 ACTCTCAGAGAACAACTCCGGGAGGTCTTCTCATCAGCGAAGCCACCGGAGTTTCCGAAA 180
| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 141 ATTGTCAAAGAACAACTCCGGGAGGTCTTCTCATCAGTGAAGCCACCGGAGTTTCTGAAA 200
Query 181 CCGCCATGGCGTATCAAAACATGCCAGGGATATGGAGGAAAGAACAAATCCAAGCATGGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 201 CCGCCATGGCGTATCAAAACATGCCAGGGATATGGAGGAAAGAACAAATCGAAGCATGGA 260
Query 241 AGCCCATCGTCGACGCCGTTCACTCTCACGGCGGCGTCTTCTTCTGCCAGCTATGGCACG 300
|||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 261 AGCCCATCGTTGACGCTGTTCACTCTCACGGCGGCATCTTCTTCTGCCAGCTCTGGCACG 320
Query 301 CTGGTCGCGTTTCTCATCGAGATTGTCAGCCAAATGGAGAAGCTCCGGTCTCTTCTACGG 360
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || |
Sbjct 321 CTGGTCGCGTTTCTCATCAAGATTGTCAGCCAAATGGAGAATCTCCGGTCTCTTCAACAG 380
Query 361 ATAAGCCATTCGTCGAGGATCCATCGAATGAGTTCACTCCTCCGAGAAGGCTAAGAACTG 420
|||||||||||| ||| ||||||||||||||||| || |||||||||||| |||||||||
Sbjct 381 ATAAGCCATTCGCCGATGATCCATCGAATGAGTTTACACCTCCGAGAAGGTTAAGAACTG 440
Query 421 ACGAAATCCCGACAATTGTCAATGATTTTCGTCTCGCTGCAAGAAACGCAATCGAAGCTG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 441 ACGAAATCCCGACAATTATCAATGATTTTCGTCTCGCTGCAAGAAACGCAACCGAAGCTG 500
Query 481 GTTTCGACGGAGTGGAGATCCATGGAGCTCACGGGTATTTGCTCGACCAGTTTGTGAAAG 540
|||| || ||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 501 GTTTTGATGGAGTAGAGATCCATGGAGCTCACGGGTACTTGATTGACCAGTTTATGAAAG 560
Query 541 ACTCTGTTAACGATCGAACCGATAGGTACGGCGGATCTCTAGAGAATCGATGCAGATTCG 600
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 561 ACTCTGTTAACGATCGAACCGATAGTTACGGCGGATCTCTAGAGAATCGATGTAGATTCG 620
Query 601 CTTTACAAGTTATAGAAGCGGTCTCGAACGAGATCGGACCTGATCGTGTCGGAATCAGAC 660
|||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 621 CTTTACAAGTAATCGAAGCGGTTTCGAAAGAGATCGGACCTGATCGTGTCGGAATCAGAC 680
Query 661 TCTCTCCGTTCGCTAATTACATGGAATCAGGAGATTCAGACCCAAAAAGATTAGGGCTTT 720
|||| ||||||||| ||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 681 TCTCACCGTTCGCTGATTACATGGAATCCGGAGATACAGATCCAAAAAGATTAGGGCTTT 740
Query 721 ACATGGCAAACTCTCTGAACAGATTCGAGATACTCTACTGTCACATGGTCGAGCCTAGAA 780
||||||| || ||||| ||||||||||||||||||||||| |||||| | |||||||| |
Sbjct 741 ACATGGCCAAGTCTCTCAACAGATTCGAGATACTCTACTGCCACATGATTGAGCCTAGGA 800
Query 781 TGAAAACAGCCAGTGAGATTTTCGAGTGCACGGAATCACTTACGCCGATGAGAAAGGCGT 840
||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 801 TGAAAACCGTCAGTGAGATTTTCGAGTGCAGGGAATCACTTACGCCGATGAGAAATGCGT 860
Query 841 TTAATGGAGCGTTCATTGTCGCCGGAGGTTATACAAGAGAAGACGGGAACAAGGCGGTGG 900
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 861 TTAATGGAACGTTCATTGTCGCCGGAGGTTATACAAGAGAAGACGGAAACAAGGCGGTGG 920
Query 901 CAGAGGAAAGAACAGATCTTGTGGCGTACGGACGACTGTTCTTGGCTAATCCAGATTTGC 960
|||||| ||||||||||||||| ||||||||| || ||||||| |||||||| |||||||
Sbjct 921 CAGAGGGAAGAACAGATCTTGTAGCGTACGGAAGATTGTTCTTAGCTAATCCTGATTTGC 980
Query 961 CTAGAAGGTTCGAGCTCGATGCCCCGCTGAATAAGTACGACAGACCAAGTTTCTATAGTT 1020
||| |||||| |||||| |||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 981 CTAAAAGGTTTGAGCTCAATGCTCCGCTGAATAAGTAAGACAGACCAAGTTTCTACAGTT 1040
Query 1021 CTGATCATGCCGTTGGTTATACTGATTACCCTTTTCTCGACACCACAGATCAATAAAACC 1080
|||||| || | |||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 1041 CTGATCCTGTTGCTGGTTACACTGATTACCCTTTTCTCGATACCACAGATCAATAAGACA 1100
Query 1081 -GTGTCTTGTTCAATC 1095
| |||||||||||||
Sbjct 1101 AGAGTCTTGTTCAATC 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5