BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919704
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66800.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 396 2e-109
AT1G09480.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 375 3e-103
AT1G09490.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 372 4e-102
> AT1G66800.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:24924813-24926365 FORWARD LENGTH=1128
Length=1128
Score = 396 bits (214), Expect = 2e-109
Identities = 343/403 (85%), Gaps = 17/403 (4%)
Strand=Plus/Plus
Query 17 AGAGATGAACGGCGGAGGAAAGGTGGCCTGCGTCACCGGAGCTACCGGGTACATAGCGTC 76
||| |||||||||| ||||||||| | ||||||||||||||| |||| |||||||| ||
Sbjct 38 AGAAATGAACGGCGAAGGAAAGGTTGTTTGCGTCACCGGAGCTTCCGGATACATAGCTTC 97
Query 77 TTGGATTGTGAAGCTTTTGCTCCTCCGTGGCTACACCGTCAAGGCCACTGTTCGAGACCC 136
||||||||| ||||||||||||||||||||||||||||||| |||||| || ||| ||||
Sbjct 98 TTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACCGTCAGGGCCACCGTCCGAAACCC 157
Query 137 AAAGGATACAAAGAAAACAAAGCATCTTCTTGCCCTTGAAGGCGCAGAG-GAAAGACTAA 195
|| |||||||||||||||||| ||||||||| | |||||||| ||| || ||||||||||
Sbjct 158 AATGGATACAAAGAAAACAAATCATCTTCTTACACTTGAAGGTGCA-AGTGAAAGACTAA 216
Query 196 AATTGTTCAAAGCAGATCTTTTGGAAGAAGGTTCGGTCCAACAAGCTATAGAGGGATGCG 255
|| |||||||| |||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 217 AACTGTTCAAATCAGATCTTTTGGAAGAAGGTTCTTTCGATCAAGCTATAGAGGGATGCG 276
Query 256 ATGGTGTCTTCCATA-TCGCCTCTCCAGTCAT-ACTTA-CCGCTACAGATCCTCAGGCAT 312
| ||||||||||||| | ||||||||||| | | ||| ||| ||||||||||||| |
Sbjct 277 ACGGTGTCTTCCATACT-GCCTCTCCAGTT-TCA-TTAACCGTTACAGATCCTCAG--A- 330
Query 313 TTCAGGCTGAGCTGATTGATCCAGCCGTTAAAGGTACAATGAACGTTTTGAAAACATGCG 372
| |||| |||| ||||| || ||||| ||||| |||||||||||| ||| ||||
Sbjct 331 --C----TGAGATGATCGATCCGGCGGTTAATGGTACTTTGAACGTTTTGAGAACGTGCG 384
Query 373 CGAAAGCTTCCTCGGTAAAGAGGGTCGTTGTAACATCTTCCAC 415
| |||| ||| || || ||||||||| |||||||||| |||||
Sbjct 385 CCAAAGTTTCTTCTGTGAAGAGGGTCATTGTAACATCGTCCAC 427
> AT1G09480.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:3057975-3060661 FORWARD LENGTH=1110
Length=1110
Score = 375 bits (203), Expect = 3e-103
Identities = 393/480 (82%), Gaps = 31/480 (6%)
Strand=Plus/Plus
Query 21 ATGAACGGCGGAGGAAAGGTGGCCTGCGTCACCGGAGCTACCGGGTACATAGCGTCTTGG 80
|||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||
Sbjct 142 ATGAACGGCGGAGGAAAGTTGGTCTGCGTCACCGGAGCTTCCGGTTACATAGCGTCTTGG 201
Query 81 ATTGTGAAGCTTTTGCTCCTCCGTGGCTACACCGTCAAGGCCACTGTTCGAGACCCAAAG 140
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 202 ATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAAGGCCACTGTTCGAGATCTAACG 261
Query 141 GATACAAAGAAAACA-AAGCATCTTCTTGCCCTTGAAGGCGCAGAGGAAAGACTAAAATT 199
|| | ||||||||| || ||||||||||| ||||| || ||| | |||||||| |||||
Sbjct 262 GACAGGAAGAAAACAGAA-CATCTTCTTGCACTTGATGGTGCAAAAGAAAGACTCAAATT 320
Query 200 GTTCAAAGCAGATCTTTTGGAAGAAGGTTCGGTCCAACAAGCTATAGAGGGATGCGATGG 259
||||||||||||||||||||||||| ||| || |||||||||| || ||||| || |
Sbjct 321 GTTCAAAGCAGATCTTTTGGAAGAATCTTCTTTCGAACAAGCTATTGAAGGATGTGACGC 380
Query 260 TGTCTTCCATATCGCCTCTCCAGTCATACTT-ACCG-CTACAGATCCTCAGGCATTTCAG 317
||||||||| | ||| |||||||| | ||| |||| | | |||||||||| | |
Sbjct 381 TGTCTTCCACACCGCATCTCCAGTTTT-CTTCACCGTCAA-AGATCCTCAG--A---C-- 431
Query 318 GCTGAGCTGATTGATCCAGCCGTTAAAGG-TACAATGAACGTT-TTGAAAACATGCGC-G 374
||||||||||||||||||| ||||||| ||| |||||||| || || |||||| |
Sbjct 432 --TGAGCTGATTGATCCAGCC-TTAAAGGGTACTATGAACGTCCTT-AATACATGCAAAG 487
Query 375 AAAGCTTCCTCGGTAAAGA-GGGTCGTTGTAACATCTTCCACAGCCGTTGTTCT-TGGTT 432
||| || |||| || | || ||||| || | ||||| ||||| || | ||||| | ||
Sbjct 488 AAA-CTCCCTCTGTCA-GAAGGGTCATTCTGACATCATCCACGGCTGCGGTTCTCT--TT 543
Query 433 -GTAAGCCACCCT-TAG-GGCCAAACGACGTGGTGGACGAAACGTTCTTCTCCTATCCAA 489
|| ||||||| | | | ||| || ||| ||||||||||| || ||||||||| ||||||
Sbjct 544 CGTCAGCCACC-TGTGGAGGC-AAGCGATGTGGTGGACGAGACTTTCTTCTCCGATCCAA 601
Score = 152 bits (82), Expect = 5e-36
Identities = 105/115 (91%), Gaps = 5/115 (4%)
Strand=Plus/Plus
Query 720 ATGATGAATGAAATGACATACAAAGTATGTGTGGAGAAAGTGAA-ATGTTTGGGAATCGA 778
|||||| |||||||| |||||||||| ||||||||||||||||| | |||||||||| ||
Sbjct 1 ATGATGCATGAAATGGCATACAAAGTGTGTGTGGAGAAAGTGAAGA-GTTTGGGAATTGA 59
Query 779 GTT--C-ACTCCTATAGAAGAAACCCTCAGAGACACTATTGTTAGCCTTAAGGAG 830
||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 GTTCACTACTCCTATAGAAGAAACCCTCAGAGACACTATTGTTAGCCTTATGGAG 114
> AT1G09490.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:3064124-3065937 FORWARD LENGTH=1139
Length=1139
Score = 372 bits (201), Expect = 4e-102
Identities = 395/484 (82%), Gaps = 31/484 (6%)
Strand=Plus/Plus
Query 17 AGAGATGAACGGCGGAGGAAAGGTGGCCTGCGTCACCGGAGCTACCGGGTACATAGCGTC 76
||| |||||| ||||||||||||||| |||||| ||||||||| |||| |||||||||||
Sbjct 45 AGATATGAACTGCGGAGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTACATAGCGTC 104
Query 77 TTGGATTGTGAAGCTTTTGCTCCTCCGTGGCTACACCGTCAAGGCCACTGTTCGAGACCC 136
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 105 TTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAGATCC 164
Query 137 AAAGGATACA-AAGAAAACA-AAGCATCTTCTTGCCCTTGAAGGCGCAGAGGAAAGACTA 194
|||||| | | ||||||||| || ||||||||||| || || || ||| | ||||||||
Sbjct 165 AAAGGACA-AGAAGAAAACAGAA-CATCTTCTTGCACTAGACGGTGCAAAAGAAAGACTC 222
Query 195 AAATTGTTCAAAGCAGATCTTTTGGAAGAAGGTTCGGTCCAACAAGCTATAGAGGGATGC 254
|||||||||||||||||||||||||||||| ||| | | |||||||| || || ||
Sbjct 223 AAATTGTTCAAAGCAGATCTTTTGGAAGAATCTTCTTTTGATCAAGCTATCGATGGTTGT 282
Query 255 GATGGTGTCTTCCATA-TCGCCTCTCCAGT-CATACTT-ACCG-CTACAGATCCTCAGGC 310
|||| ||||||||| | | || |||||||| | || || || | | ||||||||||||
Sbjct 283 GATGCTGTCTTCCACACT-GCTTCTCCAGTTC-TA-TTCACTGTC-ACAGATCCTCAG-- 336
Query 311 ATTTCAGGCTGAGCTGATTGATCCAGCCGTTAAAGG-TACAATGAACGTT-TTGAAAACA 368
| | ||||||||||||||||||| ||||||| ||| || ||||| || || |||
Sbjct 337 A---C----TGAGCTGATTGATCCAGCC-TTAAAGGGTACTATTAACGTCCTT-AATACA 387
Query 369 TGCGCGA-AAGCTTCCTCGGTAAAGAGGGTCGTTGTAACATCTTCCACAGCCGTTGTTCT 427
||| | ||| ||| || || ||||||||| || | ||||||||||| || | |||||
Sbjct 388 TGCAA-ACAAGTTTCTTCTGTCAAGAGGGTCATTCTGACATCTTCCACGGCTGCGGTTCT 446
Query 428 -TGGTTGTAAGCCACCC-TTAGGGCCAAACGACGTGGTGGACGAAACGTTCTTCTCCTAT 485
| | || |||| || || |||||||||||| |||||||||| || ||||||||| ||
Sbjct 447 CTC-TCGTCAGCCTCCTATT-GGGCCAAACGACCTGGTGGACGAGACTTTCTTCTCCGAT 504
Query 486 CCAA 489
||||
Sbjct 505 CCAA 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5