BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919710
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09540.1 | Symbols: MYB61, ATMYB61 | myb domain protein 61 |... 1775 0.0
AT4G01680.2 | Symbols: MYB55 | myb domain protein 55 | chr4:716... 161 1e-38
> AT1G09540.1 | Symbols: MYB61, ATMYB61 | myb domain protein 61
| chr1:3086159-3087912 FORWARD LENGTH=1498
Length=1498
Score = 1775 bits (961), Expect = 0.0
Identities = 1089/1150 (95%), Gaps = 12/1150 (1%)
Strand=Plus/Plus
Query 1 TTGCAGCTGTGTATAACTAAATGGGGAGACATTCTTGCTGTTACAAACAAAAACTGAGGA 60
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 155 TTGCAGCTGTGAATAACTAAATGGGGAGACATTCTTGCTGTTACAAACAAAAGCTGAGGA 214
Query 61 AAGGGCTTTGGTCTCCTGAAGAAGATGAGAAGCTTCTTACTCACATCACCAATCACGGCC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 215 AAGGGCTTTGGTCTCCTGAAGAAGACGAGAAGCTTCTTACTCACATCACCAATCACGGCC 274
Query 121 ATGGCTGCTGGAGCTCTGTCCCTAAACTCGCTGGTTTGCAGAGATGTGGGAAGAGTTGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 ATGGCTGCTGGAGCTCTGTCCCTAAACTCGCTGGTTTGCAGAGATGTGGGAAGAGTTGTC 334
Query 181 GACTAAGATGGATCAATTACTTGAGACCTGATTTAAAGAGAGGAGCTTTTTCTCCAGAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 335 GACTAAGATGGATCAATTACTTGAGACCTGATTTAAAGAGAGGAGCTTTTTCTCCTGAAG 394
Query 241 AGGAGAATCTCATCGTCGAGCTTCATGCCGTCCTCGGAAACAGATGGTCACAGATTGCGT 300
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 395 AAGAGAATCTCATCGTCGAACTTCATGCCGTCCTTGGAAACAGATGGTCACAGATTGCGT 454
Query 301 CAAGGCTTCCGGGTAGAACCGACAACGAGATCAAGAATCTATGGAACTCAAGCATCAAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CAAGGCTTCCGGGTAGAACCGACAACGAGATCAAGAATCTATGGAACTCAAGCATCAAGA 514
Query 361 AGAAACTGAAACAAAGAGGCATTGACCCAAACACACACAAACCCATCTCCGAACTTGAGA 420
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 515 AGAAACTGAAACAAAGAGGCATTGACCCAAACACACACAAGCCCATCTCTGAAGTTGAGA 574
Query 421 GCTTTAGCGACAAAGACAAACCAACAACAAGCAACAACAAAATAAGCGGTAACGACCACA 480
| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 575 GTTTTAGCGACAAAGACAAACCAACAACAAGCAACAACAAAAGAAGCGGTAACGATCACA 634
Query 481 AGTCTCCTAGTTCCTCTTCTGCGACTAACCAAGACTTCTTCATAGAAAGGCCATCTGAAT 540
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 635 AGTCTCCTAGTTCCTCTTCTGCGACTAACCAAGACTTCTTCCTCGAAAGGCCATCTGATT 694
Query 541 TCTCCGACTACTTCGGATTTCAGAAGCTTAACTTCAACTCCAATCTCGGACTCTCTGTGA 600
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 695 TATCCGACTACTTCGGATTTCAGAAGCTTAACTTCAACTCCAATCTAGGACTCTCTGTTA 754
Query 601 CAACTGATACTTCACTCTGCTCAATGATTCCACCGCAGTTTAGCTCCGGAAACATGGTTG 660
|||||||| ||||||||||||| |||||||| |||||||||||| |||| ||||||||||
Sbjct 755 CAACTGATTCTTCACTCTGCTCGATGATTCCGCCGCAGTTTAGCCCCGGGAACATGGTTG 814
Query 661 GTTCTGTCTTTCAGACACCAGTATGCGTAAAGCCCTCAATTAATCTTCCTCCTGACAACA 720
|||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct 815 GTTCTGTCCTTCAGACACCAGTATGCGTAAAGCCCTCGATTAGTCTTCCTCCCGACAACA 874
Query 721 ACAGTTCAAGTCCGGTCTCTGGAGGAGATCATGTGAAATTGGCTGCACCAAACTGGGAAT 780
||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 875 ACAGTTCGAGTCCTATCTCCGGAGGAGATCATGTGAAATTGGCTGCACCAAACTGGGAAT 934
Query 781 TTCAGACAAACAACAACA---CCTCAAATTTCTTCGACAATGGCGGATTCTCATGGTCAA 837
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 935 TTCAGACAAACAACAATAATACCTCAAATTTCTTCGACAATGGCGGATTCTCATGGTCTA 994
Query 838 TCCCAAATTCTTCTACTTCTTCTTCACAAGTCAAACCAAATCATAACTTGGAAGAAATAA 897
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 995 TCCCAAATTCTTCTACTTCTTCTTCACAAGTCAAACCAAATCATAACTTCGAAGAAATAA 1054
Query 898 AATGGTCAGAGTATTTGAACACACCGTTCTTCATAGGGAACACTGTACAGAGTCAAAGCT 957
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1055 AATGGTCAGAGTATTTGAACACACCGTTCTTCATAGGGAGTACTGTACAGAGTCAAACCT 1114
Query 958 CTCAACCAATCTACATTAAATCAGAGACAGATTACTTAGCCAATGTTTCAAACATGACAG 1017
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1115 CTCAACCAATCTACATCAAATCAGAAACAGATTACTTAGCCAATGTTTCAAACATGACAG 1174
Query 1018 ATCCTTGGACCCAAACCCAAAACGAAAACTTGGGCACAGCTGATACTAGTGACGTGTTCG 1077
||||||||| ||||| | ||| |||||||||||| |||| |||||||||||||||
Sbjct 1175 ATCCTTGGAGCCAAA---A---CGAGAACTTGGGCACAACTGAAACTAGTGACGTGTTCT 1228
Query 1078 CCAAGGATCTTCAGAGAATGGCCGTCTCATTTGGTCAGTCCCTTTAGttttttt-ttt-t 1135
|||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |
Sbjct 1229 CCAAGGATCTTCAGAGAATGGCCGTCTCTTTTGGTCAGTCCCTTTAGCTTTTTTCTTTCT 1288
Query 1136 tt-tttCTTA 1144
|| |||||||
Sbjct 1289 TTCTTTCTTA 1298
> AT4G01680.2 | Symbols: MYB55 | myb domain protein 55 | chr4:716021-717415
REVERSE LENGTH=1248
Length=1248
Score = 161 bits (87), Expect = 1e-38
Identities = 121/137 (88%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 21 ATGGGGAGACATTCTTGCTGTTACAAACAAAAACTGAGGAAAGGGCTTTGGTCTCCTGAA 80
||||| |||||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAGACATTCATGTTGTTACAAACAGAAACTGAGGAAAGGACTTTGGTCTCCTGAA 60
Query 81 GAAGATGAGAAGCTTCTTAC-TCACATCACCAA-TCACGGCCATGGCTGCTGGAGCTCTG 138
|||||||||||||||||| | | ||||||| || | | || ||||| |||||||||||||
Sbjct 61 GAAGATGAGAAGCTTCTT-CGTTACATCACTAAGT-ATGGTCATGGTTGCTGGAGCTCTG 118
Query 139 TCCCTAAACTCGCTGGT 155
||||||||| ||||||
Sbjct 119 TCCCTAAACAAGCTGGT 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5