BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919718
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09610.1 | Symbols: | Protein of unknown function (DUF579) ... 1445 0.0
> AT1G09610.1 | Symbols: | Protein of unknown function (DUF579)
| chr1:3111694-3112873 FORWARD LENGTH=1180
Length=1180
Score = 1445 bits (782), Expect = 0.0
Identities = 860/898 (96%), Gaps = 3/898 (0%)
Strand=Plus/Plus
Query 1 TTCTTTAATTTCGAATCAGACAATGAGGCCTAAAGCAAATCAAAGCCACAAGCTGAAGCT 60
||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 74 TTCTTAAATTTCGAAGCAGACAATGAGGCCTAAAGCAAATCAAAACCACAAGCTGAAGGT 133
Query 61 TCTCCTTGTTTTTCTTCTTGCCACCTTAATTCTCATCTTCATCTTGAGAGCAACTCTGAC 120
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 134 TCTCCTTGTTTTTCTTCTTGCCACCTTAATTCTCATCTTCATCGTGAGATCAACTCTGAC 193
Query 121 ATCTTCACATGAACAGCAGACTCCAGAAGAGACAAGAACAGCGCGTTGCTCTGGTGCTTG 180
||||||||| ||||| ||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 194 ATCTTCACAGGAACACCAGACTCCACAAGAGACAAGATCAACGCGTTGCTCTGGTGCCTG 253
Query 181 CAATAAGCTACCACGTTCCCTCGCACAAGCCCTGATCCATTACTCGACTTCGGTTATCAC 240
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 254 CAATAAGCTACCACGTTCCCTCGCACAAGCCCTGATCCATTACTCGACCTCAGTTATCAC 313
Query 241 ACCACAACAAACGCTCAAAGAGATAGCGGTTAGCAGTAGAGTACTCGGCAAAAAGTCACC 300
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 314 ACCACAACAAACGCTCAAAGAGATAGCGGTAAGCAGTAGAGTACTCGGCAAGAAGTCACC 373
Query 301 CTGCAATTTCTTGGTGTTTGGTCTAGGCCACGACAGCCTCATGTGGAGCTCTCTCAACTA 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 374 CTGCAATTTCTTGGTGTTTGGTCTAGGCCATGACAGCCTCATGTGGAGCTCTCTCAACTA 433
Query 361 TGGAGGCCGGACTGTATTTCTTGAAGAAGATGAAGCATGGATTAAACAGATCAAGAGACG 420
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 434 TGGAGGCCGGACTGTGTTTCTTGAAGAAGATGAAGCATGGATAAAACAGATCAAGAGACG 493
Query 421 GTTTCCGATGCTGGAATCGTATCATGTAACATATGACAGTAAAGTCAATCAAGCGGATAA 480
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 494 GTTTCCGATGCTGGAATCGTACCATGTAACATATGACAGTAAAGTCAATCAAGCCGATAA 553
Query 481 TCTCATAGAAGTTGGGAAAGGACCTGAATGCACAGCCATTGGAGATCCAAGGTACTCAAT 540
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCTCATAGAAGTCGGAAAAGGACCTGAATGCACAGCCATTGGAGATCCAAGGTACTCAAT 613
Query 541 GTGTCAACTAGCACTCAAGGGTTTGCCTGCAGAAATCTATGAGACTAGTTGGGATCTAAT 600
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 614 GTGTCAACTAGCACTCAAGGGTTTGCCTGCAGAAATTTATGAGACCGGTTGGGATCTAAT 673
Query 601 CATGGTTGATGCACCGACTGGCTACTACGATGAGGCTCCTGGGAGAATGACAGCAATTTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CATGGTTGATGCACCGACTGGCTACTACGATGAGGCTCCTGGGAGAATGACAGCAATTTA 733
Query 661 CACAGCGGGAATGATGGCGAGGAACAGGAAACAGGGAGGAGAGACTGATGTGTTTGTGCA 720
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CACTGCGGGAATGATGGCAAGGAACAGGAAACAGGGAGGAGAGACTGATGTGTTTGTGCA 793
Query 721 TGATGTGAACAGGGAAATAGAAAACAAGTTCTCTAAGACTTTCTTGTGTGAAGGGTACAT 780
|||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 794 TGATGTTAACAGGGAAATAGAAGACAAGTTTTCTAAGGCTTTCTTGTGTGAAGGGTACAT 853
Query 781 GAAGAAACAGGAAGGGAGACTAAGGCATTTTGTTATCCCTAGCTATAGAGATGGATCAGA 840
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 854 GAAGAAACAGGAAGGGAGACTAAGGCATTTTATTATCCCTAGCTATAGAGATGGATCAGA 913
Query 841 ATCAGAATCAAATAGACCCTTTTGTCCATAGTAAACACATGTAACCTAGA--TCTCCT 896
|||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||
Sbjct 914 ATCAGAATCAAATAGACCCTTTTGTCCATAGTGA-CACATGTTACCTAGAGATCTCCT 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5