BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919720

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09625.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   243    8e-64


> AT1G09625.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 4 Blast hits to 4 proteins in 2 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:3117137-3117567 REVERSE LENGTH=431
Length=431

 Score =  243 bits (131),  Expect = 8e-64
 Identities = 215/252 (85%), Gaps = 19/252 (8%)
 Strand=Plus/Plus

Query  21   ATGGAGATCCCAATCTGGGGATGGTGTATTATCGTCGCAGCTATAATAATCTTGGCGGTT  80
            ||||||||||||||||||||||||||||||||||||||||  ||||||||  || |||||
Sbjct  1    ATGGAGATCCCAATCTGGGGATGGTGTATTATCGTCGCAGGAATAATAATGGTGACGGTT  60

Query  81   TTGT-CTAATTTTCTCGGA-AGGCGGTACTTGAAACCTCGTGAGATAGAAGAAGATGGTA  138
            || | | ||||| |||| | ||| ||| || |||||||| ||||||||||||||||||||
Sbjct  61   TTATGC-AATTTGCTCG-ATAGGTGGTGCTCGAAACCTCTTGAGATAGAAGAAGATGGTA  118

Query  139  AAGCGTCGTCTTCTGTGACTTTGGAGAAGAAGGAACCTGTTCCTGTGAAAGAAGACGGTA  198
            |||||||||||||||| |||||||||||||||||   |   || ||||||||||| ||||
Sbjct  119  AAGCGTCGTCTTCTGTAACTTTGGAGAAGAAGGA---T---CCAGTGAAAGAAGATGGTA  172

Query  199  AGAGCAAGACGAACGAGAAGGCAC--GCG--G-----TGATAACCTCGTCTGAAGAAAAT  249
            ||||||||||||||||||||||||  ||   |     | |||| ||||| ||||||||||
Sbjct  173  AGAGCAAGACGAACGAGAAGGCACAAGCTAAGCCAAATAATAATCTCGTTTGAAGAAAAT  232

Query  250  TTTCAATATATT  261
            ||||||||||||
Sbjct  233  TTTCAATATATT  244



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11963724262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5