BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919721
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09630.1 | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, ... 1173 0.0
> AT1G09630.1 | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A,
RAB11c | RAB GTPase 11C | chr1:3118203-3119708 REVERSE LENGTH=938
Length=938
Score = 1173 bits (635), Expect = 0.0
Identities = 676/696 (97%), Gaps = 2/696 (0%)
Strand=Plus/Plus
Query 1 TCCTCGAAG-AAAGTGTAACAATGGCGAGAAGACCGGACGAAGAATACGACTACTTGTTT 59
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCCTCG-AGAAAAGTGTAACAATGGCGAGAAGACCGGACGAAGAATACGACTACTTGTTT 176
Query 60 AAAGTGGTTTTGATCGGAGACTCCGGTGTCGGCAAGTCAAATCTCCTCTCTAGATTCACT 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 177 AAAGTGGTTTTGATCGGAGACTCCGGTGTCGGCAAGTCTAATCTCCTCTCTAGATTCACT 236
Query 120 CGCAACGAGTTCTGCTTAGAATCCAAATCCACCATCGGTGTCGAATTCGCTACTCGTACT 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 CGCAACGAGTTCTGCTTAGAATCCAAATCCACCATTGGTGTCGAATTCGCTACTCGTACT 296
Query 180 CTCCAAGTGGAAGGAAGGACTGTGAAAGCTCAGATATGGGACACGGCTGGGCAAGAACGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTCCAAGTGGAAGGAAGGACTGTGAAAGCTCAGATATGGGACACGGCTGGGCAAGAACGA 356
Query 240 TACAGAGCCATAACTAGCGCCTATTACAGAGGTGCACTTGGAGCTCTTTTGGTCTATGAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TACAGAGCCATAACTAGCGCCTATTACAGAGGTGCACTTGGAGCTCTTTTGGTCTATGAT 416
Query 300 GTCACTAAGCCAACAACGTTTGAGAATGTAAGCAGGTGGTTAAAAGAACTCAGAGACCAT 359
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 GTCACCAAGCCAACAACGTTTGAGAATGTAAGCAGGTGGTTAAAAGAACTAAGAGACCAT 476
Query 360 GCAGATTCCAACATCGTCATCATGTTGATTGGAAACAAGACAGATCTGAAGCATCTCAGA 419
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 GCAGATTCCAATATAGTGATCATGTTGATTGGGAACAAGACAGATCTGAAGCATCTCAGA 536
Query 420 GCAGTTGCCACAGAGGATGCTCAGAGCTATGCAGAGAAAGAAGGCTTGTCTTTCATTGAG 479
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 537 GCAGTTGCCACAGAGGATGCTCAGAGCTATGCAGAGAAAGAAGGCTTATCTTTCATCGAG 596
Query 480 ACATCGGCTCTCGAGGCATTAAACGTAGAGAAGGCTTTTCAGACGATTCTCTCGGAGATT 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 597 ACATCGGCTCTCGAGGCATTAAACGTAGAAAAGGCTTTTCAGACGATTCTCTCGGAGGTT 656
Query 540 TATAGGATTATCAGCAAGAAGTCGATATCTTCAGACCAGACAACTGCAAATGCCAGCATC 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 TATAGGATCATCAGCAAGAAGTCGATATCTTCAGACCAGACAACTGCAAATGCCAACATC 716
Query 600 AAAGAAGGCCAAACAATTGATGTTGCTGCTACTTCTGAATCAACCGCTAAGAAACCTTGT 659
|| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 717 AAGGAAGGCCAAACAATTGATGTGGCTGCTACTTCTGAATCAAACGCTAAGAAGCCTTGT 776
Query 660 TGCTCATCGTCTTGAAAGGCTTTGTTTGTGTTGCAC 695
||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCTCATCGTCTTGAAAGGCTTTGTTTGTGTTGCAC 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5