BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919723
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09645.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 523 4e-148
AT1G57765.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 228 3e-59
> AT1G09645.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G57765.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:3122956-3124578 FORWARD LENGTH=751
Length=751
Score = 523 bits (283), Expect = 4e-148
Identities = 327/348 (94%), Gaps = 4/348 (1%)
Strand=Plus/Plus
Query 14 GAGAGAGATGAGACAGAACTCAGCAA---GTGGTCTTTCATGGCGGCGTTTACTGTTCTT 70
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 193 GAGAGAGATGAGACAGAACTCAGCAACTGGTGGTCTTTCATGGCGGCGTTTACTGTTCTT 252
Query 71 CGCTTCGATTGGTTTGCAGTTCTTCTTAGGTCTATCCGGTGATTCCAAGAATACAAATGC 130
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 253 CGCTTCGATTGGTTTGCAGTTCTTCTTAGGTCTATCGGGTGATTCCAAGAACACGAATGC 312
Query 131 AGGAGTCAAGGCAGAATCTCATACTTCTTCCAGCAAAACAGGCACAAAAGTAATCCTCAT 190
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 313 AGGAGTTAAGACAGAATCTCATACTTCTTCCAGCAAAACAGGCACAAAAGTTATCCTTGT 372
Query 191 ACTGGTTGGATTTGTGGCTGTGGCGGTGTTCTCGTTCTTTCTATACAAGCTATGGCAAAA 250
|| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 373 TCTAGTTGGATTTGTGGCTGTGGCCATGTTCTCGTTCTTCCTATACAAGCTATGGCAAAA 432
Query 251 GAAGAAAAGAGACGAGCAGTATGCTAGACTCTTGAAGCTGTTTGAGGAAGATGATGAACT 310
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 433 GAAGAAAAGAGACGAGCAGTATGCTCGACTGTTGAAGCTGTTTGAGGAAGATGATGAACT 492
Query 311 GGAGGTTGAATTAGGCCTTCGAGATTAAAAAACGCAAATTTGTCAACA 358
|||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 493 CGAGGTTGAATTAGGTCTTCGAGATTAAAAA-CGCAAATTTGTCAACA 539
> AT1G57765.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G09645.1). |
chr1:21393351-21394962 FORWARD LENGTH=773
Length=773
Score = 228 bits (123), Expect = 3e-59
Identities = 211/252 (84%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 103 TATCCGGTGATTCCAAGAATACAAATGCAGGAGTC-AAGGCAGAATCTCATACTTCTTCC 161
|||| |||||| |||| | | ||| | | |||| | ||||| ||||||||||||||||||
Sbjct 261 TATCTGGTGATCCCAATAGTTCAAGTACTGGAG-CAAAGGCTGAATCTCATACTTCTTCC 319
Query 162 AGCAAAACAGGCACAAAAGTAATCCTCATACTGGTTGGATTTG-TGGCTGTGGCGGTG-- 218
|||||||||||||| ||||| ||| | |||||| | || |||| || |||| |||| |
Sbjct 320 AGCAAAACAGGCACGAAAGTGATCTTTATACTGCTCGGGTTTGGTG-CTGTAGCGG-GAC 377
Query 219 TTCTCGTTCTTTCTA-TACAAGCTATGGCAAAAGAAGAAAAGAGACGAGCAGTATGCTAG 277
|| |||||||| || ||||| || |||||||||||||||||||| |||||||||||| |
Sbjct 378 TT-TCGTTCTT-CTTGTACAAACTGTGGCAAAAGAAGAAAAGAGATGAGCAGTATGCTCG 435
Query 278 ACTCTTGAAGCTGTTTGAGGAAGATGATGAACTGGAGGTTGAATTAGGCCTTCGAGATTA 337
|| ||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 436 GCTATTGAAACTGTTTGAGGAAGATGATGAACTCGAGGTTGAATTAGGCCTACGTGATTA 495
Query 338 A-AA-AACGCAA 347
| || || ||||
Sbjct 496 AGAAGAAAGCAA 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16789428166
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5