BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919726
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2754 0.0
> AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:3134107-3135930 REVERSE LENGTH=1824
Length=1824
Score = 2754 bits (1491), Expect = 0.0
Identities = 1718/1829 (94%), Gaps = 10/1829 (1%)
Strand=Plus/Plus
Query 22 ATGTTCAGAAACGAAATTCTAAGAAGCACACTCTCTCGATCTCAGCCACAGAGATTTTCT 81
|||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||| |||
Sbjct 1 ATGTTCAGAATCGAAATTCTAAGATGCACACTCTCTCAATCTCACCCACAGAGATTCTCT 60
Query 82 CGTGTATCGTCGTCCCTCTTATCGACATGGTACTCTCCAGAATCTATCT---CAGCAGAC 138
|||| ||| | | |||||| || ||||||||||||| ||||||| ||| | ||||||
Sbjct 61 CGTGCATCAT--T-CCTCTTGTCAACATGGTACTCTCAAGAATCTGTCTCCGCGGCAGAC 117
Query 139 GACAACAATGACCCAGTTCTTGTCAAACTCTCAGTCGCCATCAGAGATTCTTACAAGGAT 198
|| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 118 AACGACGATGACCCAGTTCTTGTTAAACTCTCAGTTGCCATCAGAGATTCTTACAAGGAT 177
Query 199 CCGCCATTGGAATTCTCTTCGTTCGCTGCCTGCTCTTCTATCAGAAACGTCCTGCCTTCG 258
||||| ||||| |||||||||||| ||| |||| | ||||||||||| ||||||||||||
Sbjct 178 CCGCCGTTGGAGTTCTCTTCGTTCACTGACTGCCCCTCTATCAGAAAGGTCCTGCCTTCG 237
Query 259 CTCAGCGTTCGTCATGTTGTTGATCTCATCAACCGTAACCCTCTCTCCCTCCCACACCGT 318
|||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 238 CTCAGCGTTCATCATGTGGTTGATCTCATCAACCATAACCCTCTCTCCCTCCCACAACGT 297
Query 319 TCTATCTTCGCTTTCTTCAAATTCATCTCATCTCAGCCTGAATTTCGTTTTACCGTTGAG 378
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 298 TCTATCTTCGCTTTCTTCAAATTCATCTCATCTCAGCCTGGATTTCGTTTTACCGTTGAG 357
Query 379 ACTTACTTCGTCATGGCTCGTTTTCTTGCTATTCACGAAATGTTCGTGGAAGCACAGTCA 438
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 358 ACTTACTTCGTCTTGGCTCGTTTTCTTGCTGTTCACGAAATGTTCACCGAAGCACAGTCA 417
Query 439 CTTATCGAGCTCGTCGTCTCTCGTAAAGGCAAAAACTCGGCTTCTTCAGTTTTCATCTCT 498
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 418 CTTATCGAGCTCGTCGTCTCTCGTAAAGGCAAAAACTCAGCTTCTTCAGTTTTCATTTCT 477
Query 499 TTGGTAGAAATGAGAGGAACACCTATGTGTGATTTCCTTGTTGATGCTTTGATGATTACG 558
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 478 TTGGTAGAAATGAGAGTAACACCTATGTGTGGTTTCCTTGTTGATGCTTTGATGATCACG 537
Query 559 TACATGGATCTAGGATTCATACCCGATGTTATTCAATGTTTTAGGCTATCTCGGAAGCAT 618
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 TACACGGATCTAGGTTTCATACCCGATGCTATTCAATGTTTTAGGCTATCTCGGAAGCAT 597
Query 619 A-ATTTCGTTGTTCCAATTCGTGGCTGTGGCAATTTGCTTGATCGGATGATGAAGCTGAA 677
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGGTTT-GATGTTCCAATTCGTGGCTGTGGCAATTTGCTTGATCGGATGATGAAGCTGAA 656
Query 678 TCCAACTGGGACTGTTTGGGGATTTTATATGGAGATTTTGGATGCTGGGTTTCCCTTGAA 737
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 TCCAACTGGGACTATTTGGGGATTCTATATGGAGATTTTGGATGCTGGGTTTCCCTTGAA 716
Query 738 TGTGTACGTTTTCAATATTTTGATGAACAAAATT-TGTAAAGAAGGCAATATATGTGATG 796
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 717 TGTGTACGTTTTCAATATTTTGATGAACAAA-TTCTGTAAAGAAGGCAATATATCTGATG 775
Query 797 CCCAGAAGGTGTTCGACGAAATTACTAAAAGGAGTTTGCGGCCTACAGTGGTTAGTTTCA 856
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 776 CACAGAAGGTGTTCGACGAAATTACTAAAAGGAGTTTGCAGCCTACAGTGGTTAGTTTCA 835
Query 857 ACACTTTGATAAATGGGTATTGTAAAGTGGGAAACTTGGATGTAGGGTTCAGGCTTAAAC 916
|||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||
Sbjct 836 ACACTTTGATAAATGGGTATTGTAAAGTAGGAAACTTGGATGAAGGGTTTAGGCTCAAAC 895
Query 917 ATCATATGGAGAAAAGCAGAACACGTCCAGATGTTTTCACCTATAGTGCCTTGATTAATG 976
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 ATCAGATGGAGAAAAGCAGAACACGCCCAGATGTTTTCACCTATAGTGCCTTGATTAATG 955
Query 977 CACTGTGTAAGGAGAACAAAATGGACGGAGCACATCGCCTGTTTTATGAGATGTGTGAGA 1036
|| ||||||| |||||||||||||| ||||||||| |||||||| ||||||||||| |||
Sbjct 956 CATTGTGTAAAGAGAACAAAATGGATGGAGCACATGGCCTGTTTGATGAGATGTGTAAGA 1015
Query 1037 GAGGGTTGATCCCAAATGATGTTATTTTCAATACTTTGATTCATGGTCATAGTAGGAATG 1096
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1016 GAGGGTTGATCCCAAATGATGTTATTTTCACTACTTTGATTCATGGTCATAGTAGGAATG 1075
Query 1097 GACAGATTGACTTAATGAAAGAAAGTTATCAGAAGATGTTAAGTAAGGGTCTTCAGCCTG 1156
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1076 GAGAGATTGACTTGATGAAAGAAAGTTATCAGAAGATGTTAAGTAAGGGTCTGCAGCCTG 1135
Query 1157 ATATTGTTTTATATAATACTTTAGTAAATGGCTTTTGCAAGAACGGGGATTTGGTGGCCG 1216
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1136 ATATTGTTTTATATAATACTTTAGTAAATGGCTTTTGTAAGAACGGGGATTTGGTGGCTG 1195
Query 1217 CAAGGAATATAGTTGATGGGATGATCCGTAGAGGTCTGAGGCCTGACAAAGTTACATATA 1276
||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||| |
Sbjct 1196 CAAGGAATATAGTTGATGGAATGATTCGTAGAGGTCTGAGGCCCGACAAAATTACATACA 1255
Query 1277 CGACTCTTATAGATGGATTTTGTAGAGGAGGAGATGTAGACACAGCTTTGGAGATAAGGA 1336
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1256 CAACTCTTATAGATGGATTTTGTAGAGGAGGAGATGTAGAAACAGCTTTGGAGATAAGGA 1315
Query 1337 AGGAAATGGATCAGAATGGGATAGAACTTGATAGGGTGGGTTTCTCAGCTCTTATTTGTG 1396
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1316 AGGAGATGGATCAGAATGGGATAGAACTCGATAGGGTGGGTTTCTCAGCCCTTGTTTGTG 1375
Query 1397 GAATGTGCAAAGAAGGAAGAGTCATTGATGCTGAAAGAGCTTTGAGAGAGATGCTGCGAG 1456
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1376 GAATGTGCAAAGAAGGAAGAGTCATTGATGCTGAAAGAGCTTTAAGAGAGATGCTGCGAG 1435
Query 1457 CTGGTATGAAGCCGGATGATGTAACCTATACAATGATGATGGATGCATTCTGTAAGAAAG 1516
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CTGGTATTAAACCGGATGATGTAACCTATACAATGATGATGGATGCATTCTGTAAGAAAG 1495
Query 1517 GTGATGCTCAAACCGGTTTCAAATTGCTTAAGGAAATGCAGAGTGATGGGCATATTCCTA 1576
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1496 GTGATGCTCAGACCGGTTTCAAATTGCTCAAGGAAATGCAGAGCGATGGGCATGTTCCTA 1555
Query 1577 ACGTTGTGACGTATAATGTTCTGCTGAATGGACTATGCAAATTGGGACAGATGAAGAATG 1636
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1556 GTGTTGTGACGTATAATGTTCTGCTGAATGGTCTATGCAAATTGGGACAGATGAAGAATG 1615
Query 1637 CTGACATGTTGCTAGATGCCATGCTTAATGTAGGGGTTGTTCCGGATGACATCACATACA 1696
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1616 CTGATATGTTGCTAGATGCCATGCTTAATATAGGGGTTGTTCCAGATGACATCACATACA 1675
Query 1697 ACACCCTATTGGAAGGTCACCATAGACATGCAAATGCATCGAAGCATTATAAACAAAAAC 1756
|||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||
Sbjct 1676 ACACTCTATTGGAAGGTCACCATAGACATGCAAATTCATCGAAGCGTTATATACAGAAAC 1735
Query 1757 CTGAGATAGGGATTGTAGCTGACTTGGCTTCTTACAAATCACTAGTCAATGAGCTCTATA 1816
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1736 CGGAGATAGGTATTGTAGCTGACTTGGCTTCTTACAAATCAATAGTCAATGAGCTAGATA 1795
Query 1817 GAGCTTCAAAAGATCACCGGAACAGATAA 1845
|||||||||||||||||||||||||||||
Sbjct 1796 GAGCTTCAAAAGATCACCGGAACAGATAA 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92318802255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5