BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919727
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09690.1 | Symbols: | Translation protein SH3-like family p... 902 0.0
AT1G09590.1 | Symbols: | Translation protein SH3-like family p... 811 0.0
AT1G57660.1 | Symbols: | Translation protein SH3-like family p... 619 7e-177
AT1G57860.1 | Symbols: | Translation protein SH3-like family p... 612 1e-174
> AT1G09690.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3136188-3137475 REVERSE LENGTH=759
Length=759
Score = 902 bits (488), Expect = 0.0
Identities = 530/550 (96%), Gaps = 4/550 (1%)
Strand=Plus/Plus
Query 1 ATCTAGGGTTTTAGTTGTCGCACGAGGAGAAAAAATGCCGGCGGGTCATGGAGTTCGGGC 60
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 12 ATCTAGGGTTTTAGTTGTCGCACGAGGAGGAAAAATGCCAGCGGGTCATGGAGTTCGGGC 71
Query 61 GAGAACGAGGGATCTGTTCGCGAGGCCGTTCAGGAAGAAGGGTTATATTCCACTATCGAC 120
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 72 GAGAACGAGGGATCTGTTCGCGAGGCCATTCAGGAAGAAGGGTTACATTCCACTCTCGAC 131
Query 121 GTACCTGAGAACCTTCAAGGTCGGCGACTACGTCGATGTGAAGGTGAATGGTGCGATCCA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 132 TTACCTGAGAACCTTCAAGGTCGGCGATTACGTCGATGTGAAGGTGAATGGTGCGATCCA 191
Query 181 CAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTGTCTGGAACGTCACCAA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 192 CAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAA 251
Query 241 GCGTGCCGTCGGTGTTGAAGTCAACAAACAGATTGGCAACAGGATCATAAGGAAGAGGAT 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ACGCGCCGTCGGTGTTGAAGTCAACAAACAGATTGGCAACAGGATCATAAGGAAGAGGAT 311
Query 301 TCATGTGCGTGTGGAGCATGTGCAGCAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TCATGTGCGTGTGGAGCATGTGCAGCAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAA 371
Query 361 GAAGAAGAACGATGAGCTCAAGGCTGCAGCCAAAGCCACA-GGCGAGACCATCAGCACCA 419
||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 372 GAAGAAGAATGATGAGCTCAAGGCTGCAGCCAAAGCCA-ATGGTGAGACCATCAGCACCA 430
Query 420 AGAGACAGCCTAAGGGACCCAAACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTG 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGAGACAGCCTAAAGGACCCAAACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTG 490
Query 480 TCACTCCAATCCCTTACGATGTTGTCAACGATCTCAAGGGAGGCTATTAGTTCTATCTTC 539
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 491 TCACTCCAATCCCGTACGATGTCGTCAACGATCTCAAGGGAGGCTATTAGTTCTATCTTC 550
Query 540 C-AGTTGTTT 548
| ||| ||||
Sbjct 551 CCAGT-GTTT 559
> AT1G09590.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3106502-3107772 FORWARD LENGTH=708
Length=708
Score = 811 bits (439), Expect = 0.0
Identities = 490/515 (95%), Gaps = 2/515 (0%)
Strand=Plus/Plus
Query 26 GGAGAAAAAATGCCGGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGG 85
|||| |||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 39 GGAGGAAAAATGCCGGCTGGACATGGAGTTCGAGCGAGAACGAGGGATCTGTTCGCGAGG 98
Query 86 CCGTTCAGGAAGAAGGGTTATATTCCACTATCGACGTACCTGAGAACCTTCAAGGTCGGC 145
|| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct 99 CCTTTCAGGAAGAAGGGTTACATTCCTCTATCGACTTACCTGAGGACCTTCAAGGTCGGC 158
Query 146 GACTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTAC 205
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTAC 218
Query 206 CACGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTTGAAGTCAAC 265
|| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 219 CATGGTCGTACTGGTCGTATCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAAC 278
Query 266 AAACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAG 325
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 279 AAACAGATTGGGAACAGGATCATAAGGAAGAGGATTCATGTTCGTGTGGAGCATGTGCAG 338
Query 326 CAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAACGATGAGCTCAAGGCT 385
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 339 CAGTCAAGATGTGCCGAGGAGTTCAAGCTGAGGAAGAAGAAAAACGATGAGCTCAAGGCT 398
Query 386 GCAGCCAAAGCCACA-GGCGAGACCATCAGCACCAAGAGACAGCCTAAGGGACCCAAACC 444
||||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 399 GCAGCCAAAGCCA-ATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACC 457
Query 445 AGGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTTGT 504
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 458 AGGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCCTACGATGTCGT 517
Query 505 CAACGATCTCAAGGGAGGCTATTAGTTCTATCTTC 539
|||||||||||| ||||||||||||||||||||||
Sbjct 518 CAACGATCTCAAAGGAGGCTATTAGTTCTATCTTC 552
> AT1G57660.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21355520-21356537 FORWARD LENGTH=715
Length=715
Score = 619 bits (335), Expect = 7e-177
Identities = 447/502 (89%), Gaps = 3/502 (1%)
Strand=Plus/Plus
Query 32 AAAATGCCGGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCCGTTC 91
|||||||||||||| || ||||| |||||||||| || |||||||||||||| || |||
Sbjct 45 AAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACCATTC 104
Query 92 AGGAAGAAGGGTTATATTCCACTATCGACGTACCTGAGAACCTTCAAGGTCGGCGACTAC 151
||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |||
Sbjct 105 AGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTAC 164
Query 152 GTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGT 211
|||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct 165 GTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGT 224
Query 212 CGTACTGGTCGTGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTTGAAGTCAACAAACAG 271
||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 225 CGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAG 284
Query 272 ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGCAATCA 331
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 285 ATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACAGTCA 344
Query 332 AGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAACGATGAGCTCAAGGCTGCA-GC 390
|| |||||||||||||| || || || |||||| ||||||||| ||| ||||||| | ||
Sbjct 345 AGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAGCAGAACGATGTGCTTAAGGCTG-ATGC 403
Query 391 CAAAGCCACAGGCGAGACCATCAGCACCAAGAGACAGCCTAAGGGACCCAAACCAGGATT 450
||||||| ||| ||||| ||||||||||||||||||||||| || || ||||| || ||
Sbjct 404 TAAAGCCAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTT 463
Query 451 CATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTTGTCAACGA 510
|||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 464 CATGGTCGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTGTCAACGA 523
Query 511 TCTCAAGGGAGGCTATT-AGTT 531
||||||||| || |||| ||||
Sbjct 524 TCTCAAGGGTGGTTATTGAGTT 545
> AT1G57860.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21429898-21430865 REVERSE LENGTH=669
Length=669
Score = 612 bits (331), Expect = 1e-174
Identities = 452/511 (88%), Gaps = 5/511 (1%)
Strand=Plus/Plus
Query 24 GAGGAGAAAAAATGCCGGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGA 83
|||||| ||||||||||||||| || ||||| |||||||||| || |||||||||||||
Sbjct 28 GAGGAGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGA 87
Query 84 GGCCGTTCAGGAAGAAGGGTTATATTCCACTATCGACGTACCTGAGAACCTTCAAGGTCG 143
| || |||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 88 GACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCG 147
Query 144 GCGACTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCT 203
|||| ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 148 GCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCT 207
Query 204 ACCACGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCGTGCCGTCGGTGTTGAAGTCA 263
|||| |||||||||||||| ||||||| ||||| || |||||||| |||||||||||||
Sbjct 208 ACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAAGTCA 267
Query 264 ACAAACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGC 323
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 268 ACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGC 327
Query 324 AGCAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGA-AGAACGATGAGCTCAAG 382
| || ||||| |||||||||||||| || || || ||||| | ||||||||| ||| |||
Sbjct 328 AACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAA-ACAGAACGATGTGCTTAAG 386
Query 383 GCTGCA-GCCAAAGCCACAGGCGAGACCATCAGCACCAAGAGACAGCCTAAGGGACCCAA 441
|||| | || ||||||| ||| ||||| ||||||||||||||||||||||| || || ||
Sbjct 387 GCTG-ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAA 445
Query 442 ACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGT 501
||| || |||||||| ||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 446 ACCGGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGT 505
Query 502 TGTCAACGATCTCAAGGGAGGCTATT-AGTT 531
|||||||||||||||||| || |||| ||||
Sbjct 506 TGTCAACGATCTCAAGGGTGGTTATTGAGTT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5