BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919738

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42395.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   279    1e-74
  AT1G09794.1 | Symbols:  | Cox19 family protein (CHCH motif) | c...   121    9e-27


> AT2G42395.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17653138-17654034 
REVERSE LENGTH=797
Length=797

 Score =  279 bits (151),  Expect = 1e-74
 Identities = 282/341 (83%), Gaps = 25/341 (7%)
 Strand=Plus/Plus

Query  12   GAGAGAGGAATGAC-AACAAATTCTGGAAGCTTGTTTGAGGCAGAGGAGATATCAGATGG  70
            ||||||| |||| | || ||||||||| |||| |||||| ||||| || | |||||| ||
Sbjct  46   GAGAGAGTAATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGA-GA-A-ATCAGAGGG  101

Query  71   AGAGTGTGTTACTACTACTAAAACACAAAAAGTGCAGCAGAATGTGAGAGGTGC-A-CGG  128
            | |||||||||| || |||     ||   |||  || || || ||   | || | | | |
Sbjct  102  AAAGTGTGTTACGACGACT-----AC-TGAAGCACAACA-AA-GT---A-GT-CAACCTG  148

Query  129  ATTTTGAGCAAGGAAGAGGAGAATA-AGAGAGATAGCTACTTGTTCTGCTGTCAGAATTT  187
             |||||||||||||||||||||| |  ||||||||||||||||||||||||| | |||||
Sbjct  149  -TTTTGAGCAAGGAAGAGGAGAA-AGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTT  206

Query  188  CTACACTCTTCCTGAGATGATCAAATACATGAAGGAGAATCATGGTATAGGAGAAACCAC  247
            |||||||||||||||||||||||| | ||||||||||| ||||||| ||| | |||||||
Sbjct  207  CTACACTCTTCCTGAGATGATCAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCAC  266

Query  248  TGTGAAAAATGTTTTCAGAGAACTGTTGAAAGGTAGAAAAGCTGAAGCATATCTCCGAGA  307
            ||||| ||| |||||||| ||||| || ||||||||||||||||||||||||||| ||||
Sbjct  267  TGTGACAAAGGTTTTCAGGGAACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGA  326

Query  308  ATCTCAAAAAAGAATGAAGATAAGAACTAAAGAACAACAAC  348
            |||||| ||||||||||||  |||||| ||  |||||||||
Sbjct  327  ATCTCAGAAAAGAATGAAGGCAAGAAC-AAC-AACAACAAC  365


> AT1G09794.1 | Symbols:  | Cox19 family protein (CHCH motif) | 
chr1:3172108-3173463 FORWARD LENGTH=422
Length=422

 Score =  121 bits (65),  Expect = 9e-27
 Identities = 74/78 (95%), Gaps = 1/78 (1%)
 Strand=Plus/Minus

Query  464  TTGTTTATTACTTTTTGATTTGCTTCAAGAGAGCAGCTACAGATCCACAATGTGTTGACT  523
            ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  286  TTG-TTGTTACTTCTTGATTTGCTTCAAGAGAGCAGCTACAGATCCACAATGTGTTGACT  228

Query  524  CGTTATTGCATCTTTCAC  541
            ||||||||||||| ||||
Sbjct  227  CGTTATTGCATCTCTCAC  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25920819852


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5