BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919763
Length=2979
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09970.2 | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-... 4602 0.0
> AT1G09970.2 | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-like
protein kinase family protein | chr1:3252317-3255654
FORWARD LENGTH=3251
Length=3251
Score = 4602 bits (2492), Expect = 0.0
Identities = 2815/2974 (95%), Gaps = 10/2974 (0%)
Strand=Plus/Plus
Query 12 TCTCACCGACATGGCTCCCTCGTCAAGGAATTTCAACTTCTTTCATCACTTCTCCTCCTT 71
|||| ||||||||||||| |||| ||||||||||||||||||||| | ||||||| ||||
Sbjct 82 TCTCTCCGACATGGCTCCGTCGTTAAGGAATTTCAACTTCTTTCACCGCTTCTCCACCTT 141
Query 72 CCTCGTTTTCTCTCTGTTCTCCGTCGTTTCTTCCGACGATCTCCAAGTCTTACTCAAGCT 131
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CCTCGTCTTCTCTCTATTCTCCGTCGTTTCTTCCGACGATCTCCAAGTCTTACTCAAGCT 201
Query 132 CAAATCATCATTCGCGGATTCGAATCTCGCCGTCTTCGATTCCTGGAAGA-TGAACTCCC 190
||||||||||||||| ||||| ||||||||||| |||||||||||||| | ||||||||
Sbjct 202 CAAATCATCATTCGCCGATTCCAATCTCGCCGTGTTCGATTCCTGGAA-ACTGAACTCCG 260
Query 191 GTACCGGTCCATGTAGCTTCACCGGAGTAACCTGCAATTCTAAAGGCAACGTTACAGAGA 250
||| |||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 261 GTATCGGTCCTTGTAGCTTCATCGGAGTAACCTGTAATTCTAGAGGCAACGTTACAGAGA 320
Query 251 TTGATCTCTCTCGTCAAGGTTTATCTGGGAATTTTCCATTCGATTTGGTCTGCGAGATTC 310
||||||||||||||| ||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 321 TTGATCTCTCTCGTCGAGGTTTATCTGGGAATTTTCCATTCGATTCGGTTTGTGAGATTC 380
Query 311 AGAGTCTCGAGAAACTCTCTCTCGGATTCAATTCACTGTCTGGAATAATTCCCAGTAATA 370
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 381 AGAGTCTCGAGAAACTCTCTCTCGGATTCAATTCACTATCTGGAATAATCCCCAGCGATT 440
Query 371 TGAGAAACTGCACGAATTTGAAGTATTTGGATCTCGGGAACAATTTGTTCTCTGGTACTT 430
||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| ||| |||
Sbjct 441 TGAAAAACTGCACGAGTTTGAAGTATTTGGATCTCGGCAACAATTTATTCTCCGGTGCTT 500
Query 431 TCCCTGAATTCTCCTCTCTGAATCAGTTACAG-TACTTGTATCTCAACAACAGCGCATTT 489
||||||| ||||| ||| | |||||||||||| | | ||||||||||||||||||| |||
Sbjct 501 TCCCTGAGTTCTCATCTTTAAATCAGTTACAGTTTC-TGTATCTCAACAACAGCGCTTTT 559
Query 490 TCCGGCGCCTTTCCGTGGAAATCACTTCGAAACGCGACGAGTCTCGTCGTTTTGAGCCTA 549
||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 560 TCCGGCGTCTTTCCGTGGAAATCGCTCCGAAACGCAACGAGTCTCGTCGTTTTGAGCCTA 619
Query 550 GGCGATAATCCGTTTGATGCGACTGCTGATTTTCCGGTGGAGGTTGTTTCTCTCACGAAA 609
||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||
Sbjct 620 GGCGATAATCCGTTTGATGCGACGGCTGATTTCCCGGTGGAGGTTGTTTCTCTGAAGAAA 679
Query 610 CTCTCGTGGCTTTACTTATCGAATTGCAGTATAGCCGGAAAAATTCCAGCGGCGATCGGT 669
||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 680 CTCTCGTGGCTTTACTTGTCGAATTGCAGTATCGCCGGAAAAATTCCACCGGCGATTGGA 739
Query 670 GATTTGACGGAGCTTCGAAATTTGGAGATTGCCGATAGCAGTTTAACCGGAGAGATTCCG 729
||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||||
Sbjct 740 GATTTGACGGAGCTTCGGAATTTGGAGATTTCCGATAGCGGATTAACCGGAGAGATTCCG 799
Query 730 TCGGAGATCTCGAAACTCACCAATCTTTGGCAGTTAGAGCTTTACAACAACTCCTTGACC 789
|||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 800 TCGGAGATTTCGAAACTTACTAATCTCTGGCAGTTAGAGCTTTACAACAACTCCTTGACC 859
Query 790 GGAAAACTTCCTACCGGATTCGGAAACCTGAAGAATCTGACTTACTTGGATGCTTCAACA 849
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 860 GGAAAACTTCCTACCGGATTCGGAAACTTGAAGAATCTGACTTACTTGGACGCTTCAACA 919
Query 850 AATCTTCTACAAGGCGATTTATCGGAGCTCAGGTCTCTGACTAATCTCGTTTCACTACAA 909
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 920 AATCTTCTACAAGGCGATTTATCGGAGCTTAGGTCTCTGACTAATCTCGTTTCACTACAA 979
Query 910 ATGTTCGAAAACGAATTCTCCGGTGAGATTCCGATGGAGTTTGGCGAATTCAAGGATCTC 969
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 980 ATGTTCGAAAACGAATTCTCCGGTGAGATTCCGCTGGAGTTTGGTGAATTCAAGGATCTC 1039
Query 970 GTGAATCTCTCTCTGTATACCAACAAGTTAACCGGTTCTCTGCCTCAAGGACTCGGTTCA 1029
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GTGAATCTCTCTCTGTATACAAACAAGTTAACCGGTTCTCTGCCTCAAGGACTCGGTTCA 1099
Query 1030 CTTGCCGATTTTGATTTCATCGACGCATCAGAGAATCTCTTAACCGGACCTATCCCTCCA 1089
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1100 CTTGCTGATTTTGATTTCATCGACGCATCAGAGAATCTCTTAACCGGACCGATCCCTCCA 1159
Query 1090 GATATGTGCAAGAACGGGAAGATGAAAGCTCTGCTTCTCCTGCAAAACAATCTCACTGGC 1149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1160 GATATGTGCAAGAACGGGAAGATGAAAGCTCTGCTTCTCCTGCAAAACAACCTCACTGGC 1219
Query 1150 TCCATCCCTGACTCGTACGCTAGCTGTTTGACTCTGGAACGGTTCAGAGTAAGCGAGAAC 1209
|| |||||||| || ||||||| ||||||||||||| ||||||||||||| |||||||||
Sbjct 1220 TCTATCCCTGAGTCCTACGCTAACTGTTTGACTCTGCAACGGTTCAGAGTTAGCGAGAAC 1279
Query 1210 -TCGCTTAACGGAACTGTTCCCGCGGGACTTTGGGGCTTACCGAAGCTCGAGATCATCGA 1268
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1280 AAC-CTCAACGGAACTGTTCCCGCGGGACTTTGGGGATTACCGAAGCTCGAGATCATCGA 1338
Query 1269 TATAGAGATGAATAACTTCGAAGGTCCGATCACTGCCGATATAAAGAACGGTAAAATGCT 1328
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1339 TATAGAGATGAATAACTTCGAAGGTCCAATCACCGCGGATATAAAGAACGGTAAAATGCT 1398
Query 1329 CGGAGCATTGTATCTAGGGTTCAACAAGTTGTCTGATGAGCTGCCGGAGGAGATAGGTGA 1388
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1399 CGGAGCGTTGTATCTAGGGTTCAACAAGTTGTCTGATGAGCTGCCTGAAGAGATAGGTGA 1458
Query 1389 CACTAAATCTTTGACTAAGGTTGAGCTTAACAATAACCGGTTTACCGGGAAGATTCCGAG 1448
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1459 CACTGAATCTTTGACTAAGGTTGAGCTTAACAATAACCGGTTTACCGGGAAGATTCCTAG 1518
Query 1449 CTCCATTGGGAAACTGAAGGGACTTAGCAGTCTGAAGATGCAGAGCAATGACTTCTCTGG 1508
||||||||||||||| || |||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1519 CTCCATTGGGAAACTCAAAGGACTTAGCAGTCTAAAGATGCAGAGCAATGGCTTCTCCGG 1578
Query 1509 TGAGATACCGGACTCGATTGGATCATGCTCGATGCTCAGCGATGTAAACATGGCTCAAAA 1568
||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1579 TGAGATACCTGACTCGATTGGTTCGTGCTCGATGCTCAGCGATGTCAACATGGCTCAAAA 1638
Query 1569 CTCGCTATCCGGTGAAATCCCGCACACGCTTGGATCTCTTCCGACGCTCAACGCTTTGAA 1628
|||| ||||||| |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1639 CTCGATATCCGGAGAAATCCCCCACACGCTTGGATCACTCCCGACGCTCAACGCTTTGAA 1698
Query 1629 TCTTTCAGACAATAAGCTCACCGGGAGAATCCCAGAGAGTTTGTCGTCTCTAAGGCTTAG 1688
|||||| ||||||||| | | ||||||||||||||||||||||||||| ||||||||||
Sbjct 1699 TCTTTCGGACAATAAGTTGTCTGGGAGAATCCCAGAGAGTTTGTCGTCTTTAAGGCTTAG 1758
Query 1689 CCTTCTTGATCTGTCTAACAACAGATTATCCGGTCGTATCCCTCTGAGTTTGTCATCATA 1748
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1759 CCTTCTTGATCTGTCTAACAACAGATTATCAGGTCGTATCCCTCTGAGTTTGTCATCATA 1818
Query 1749 TAATGGTAGCTTCAATGGCAATCCTGGACTCTGTAGCATGACGATCAAATCGTTTAACCG 1808
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1819 TAATGGTAGCTTCAATGGCAATCCTGGCCTCTGTAGCACGACGATCAAATCGTTTAACCG 1878
Query 1809 GTGCATAAATCCTTCGAGATCGCATGGAGACACTCGCGTATTCGTGCTGTGTATAGTTTT 1868
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1879 GTGCATAAATCCTTCGAGATCGCATGGAGACACTCGCGTGTTCGTGTTGTGTATAGTTTT 1938
Query 1869 CGGGTCACTGATCTTGCTTGCGTCTCTTGTGTTTTTCTTGTACCTGAAGAAAACAGAGAA 1928
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 CGGGTTACTGATCTTGCTAGCGTCTCTTGTGTTTTTCTTGTACCTGAAGAAAACAGAGAA 1998
Query 1929 GAAGGAAGGCCGTTCGCTTAAACACGAGTCTTGGAGTATAAAGTCATTCCGAAAGATGAG 1988
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1999 GAAGGAGGGACGTTCGCTTAAACACGAATCTTGGAGTATAAAGTCATTCCGAAAGATGAG 2058
Query 1989 TTTCACTGAAGATGATATCATCGATTCAATCAAAGAAGAGAATTTGATCGGTAGAGGAGG 2048
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2059 TTTCACTGAAGATGATATCATTGATTCAATCAAAGAAGAGAATTTGATTGGTAGAGGAGG 2118
Query 2049 TTGTGGCGATGTGTACAGAGTAGTACTTGGTGATGGTAAAGAAGTTGCGGTCAAACACAT 2108
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2119 TTGTGGGGATGTGTACAGAGTAGTACTTGGTGATGGTAAAGAAGTTGCGGTCAAACACAT 2178
Query 2109 CCGGTGTAGTAGTACTCAGAAAAATTTCAGCAGTGCAATGCCGATTCTCACTGAACGGGA 2168
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2179 CCGGTGTAGTAGTACTCAGAAAAACTTCAGCAGTGCAATGCCGATTCTCACTGAACGGGA 2238
Query 2169 AGGAAGATCGAAGGAGTTTGAAACAGAGGTGCAAACGCTTAGCTCAATACGACACTTAAA 2228
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2239 GGGAAGATCGAAAGAGTTTGAAACAGAGGTGCAAACGCTTAGTTCGATACGACACTTAAA 2298
Query 2229 TGTGGTAAAACTCTATTGTAGCATCACGAGCGATGACTCAAGCTTGCTGGTGTACGAGTA 2288
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2299 CGTGGTGAAACTCTATTGTAGCATCACGAGCGATGACTCGAGCTTGCTGGTGTACGAGTA 2358
Query 2289 CTTGCCTAATGGAAGCTTATGGGACATGCTTCACTCTTGCAAGAAATCGAATCTCGGTTG 2348
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2359 CTTGCCTAATGGAAGCTTATGGGACATGCTTCACTCTTGCAAGAAGTCGAATCTTGGTTG 2418
Query 2349 GGAAACACGGTATGATATAGCTCTTGGTGCAGCGAAAGGGCTTGAGTACTTGCATCATGG 2408
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2419 GGAAACACGGTATGATATAGCTCTTGGTGCAGCAAAAGGGCTTGAGTACTTGCATCATGG 2478
Query 2409 GTATGAGAGACCGGTGATTCACCGTGATGTTAAATCGAGTAACATATTGCTAGATGAGTT 2468
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2479 GTATGAGAGACCGGTGATTCACCGTGATGTTAAGTCCAGTAACATATTGCTAGATGAGTT 2538
Query 2469 CTTGAAACCTAGGATTGCAGATTTTGGTCTTGCCAAGATTCTTCAGGCCAGCAATGGCGG 2528
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2539 CTTGAAACCTAGAATTGCGGATTTTGGTCTTGCCAAGATTCTTCAGGCCAGCAATGGCGG 2598
Query 2529 TCCAGATTCCACCCATGTCGTTGCGGGAACCTATGGCTACATAGCT-C--CAGAGTATGG 2585
|||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 2599 TCCAGAGTCCACGCATGTCGTTGCGGGAACCTATGGCTACATAGCTCCAGCAGAGTATGG 2658
Query 2586 ATATGCGTCAAAAGTGACTGAGAAATGCGATGTATATAGCTTCGGGGTCGTGTTGATGGA 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2659 ATATGCGTCAAAAGTGACTGAGAAATGCGATGTATATAGCTTCGGGGTCGTGTTGATGGA 2718
Query 2646 GCTGGTCACAGGGAAAAAACCGATAGAGGCAGAGTTTGGAGAGAGCAAAGACATAGTGAA 2705
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2719 GCTAGTCACAGGGAAAAAACCGATAGAGGCAGAGTTTGGAGAGAGCAAAGACATAGTGAA 2778
Query 2706 TTGGGTGAGCAACAATCTGAAGAGCAAAGAGAGTGTGATGGAGATTGTGGACAAGAAGAT 2765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2779 TTGGGTGAGCAACAATCTGAAGAGCAAAGAGAGTGTGATGGAGATTGTGGACAAGAAGAT 2838
Query 2766 AGGAGAAATGTATAGAGAAGATGCAATCAAGATACTGAGGATTGCAATCCTCTGCACGGC 2825
||||||||||||||||||||| || ||||||| ||||||||||| ||| ||||||| ||
Sbjct 2839 AGGAGAAATGTATAGAGAAGACGCGGTCAAGATGCTGAGGATTGCGATCATCTGCACCGC 2898
Query 2826 GAGACTTCCTGGACTAAGACCGACGATGAGGAGCGTGGTTCAAATGATCGAGGACGCGGA 2885
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2899 AAGACTTCCTGGACTAAGACCGACGATGAGGAGCGTGGTGCAGATGATCGAGGACGCGGA 2958
Query 2886 ACCATGCAGATTGATGGGGATTGTGATCAGCAAAGAGAGTGATGTGAAGATCAAAGAAAT 2945
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2959 ACCTTGCAGATTGATGGGGATTGTGATCAGCAAAGAGAGTGATGTCAAGGTCAAAGAAAT 3018
Query 2946 AAGTTGATGATTGAGGGACCAAAGTCACTCTTTT 2979
|||||||||||||||||||||| |||||||||||
Sbjct 3019 AAGTTGATGATTGAGGGACCAA-GTCACTCTTTT 3051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148092815736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5