BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919766
Length=2900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10110.1 | Symbols: | F-box family protein | chr1:3302742-3... 1589 0.0
AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 | chr1:... 756 0.0
AT1G10100.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 213 8e-54
AT1G10130.1 | Symbols: ECA3, ATECA3 | endoplasmic reticulum-typ... 178 3e-43
> AT1G10110.1 | Symbols: | F-box family protein | chr1:3302742-3304092
FORWARD LENGTH=1351
Length=1351
Score = 1589 bits (860), Expect = 0.0
Identities = 1102/1213 (91%), Gaps = 40/1213 (3%)
Strand=Plus/Plus
Query 48 GCAACAGATG--G-TGATACTCCGAATTGGTCGGAACTTGTCACAGACATCTGGTCATTG 104
|||||||||| | || |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1 GCAACAGATGATGATGGTACTCCGAATTGGTCGGAGCTTGTCACAGACATCTTATCATTG 60
Query 105 GTTTTCAAGCACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGG 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTTTCAAGCACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGG 120
Query 165 TACTTTGCTTCCAAATCATCCTCACCTAGAAAAAACCATACTCCGTGGCTGATTCTCTAC 224
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 121 TACTTTGCTTCCAAATCATCCTCACCTAGAAAAAATCATACTCCGTGGTTGATTCTCTAC 180
Query 225 GAAGACACGCACTGGCTCATGTTTAATTCGGAAGAAGAAAAGTTTTACAGAACACAAAAC 284
|||||||||||||||||||||||||||| || ||||||||||||||||||||| | ||
Sbjct 181 CAAGACACGCACTGGCTCATGTTTAATTCCGATGAAGAAAAGTTTTACAGAACAGTATAC 240
Query 285 CTAGGTCGCTTTGCCGAGTGTCGTGGCGTGGCGAGTTGTGGGAGTTGGGTCTTGGTCTTT 344
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CTAGGTCGCTTTGCCGAGTGTCGTGGCGTGGCGTCTTGTGGGAGTTGGGTCTTGGTCTTT 300
Query 345 GACAAGGAAATAAATTTCTACATCATTAATCCCTTCACGCCAGAGCTCATTCGTCTCCCA 404
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GACAAGGAAATCAATTTCTACATCATTAATCCCTTCACGCCACAGCTCATTCGTCTCCCA 360
Query 405 CCTCTTGAATATTCAAACAGCGGCACAAAGTTCGAGAGACCCGGTAACTATATTTTCCAC 464
||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||||||
Sbjct 361 CCTCTTGAATATTCAAACACCGGCACAAAGTTCGAGCGACCCGGTAACTATGTATTCCAC 420
Query 465 CTACTCTTCGACGATTTC-A--GAATAAACAGTGTAGTAGTGGGGAATTCGGTTCTGTGG 521
||||||||||||||| | | ||| || | ||| | ||||||||||||||||| |||||
Sbjct 421 CTACTCTTCGACGATCGCCACAGAACAAGCCGTGCAATAGTGGGGAATTCGGTTTTGTGG 480
Query 522 GTAGACGAAAAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATGTCATCCG 581
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 481 GTAGACGAAAAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATTTGTTCCG 540
Query 582 GGTGCCTACATATATTATTGCAGGAAAAGAGAGCAAGAGTGGTTTGAGATTCCGGCAAGC 641
|| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 541 AGTCCCTACATATATTATTGCAGTAAAAGAGGGCAAGAGTGGTTTGAGATTCCGGCAAGC 600
Query 642 ACTTGTGGGAAGCTATTCGGGTGTTTGGATATGGCCTACAAAGACGAGAAGCTTTACATA 701
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 ACTTGTGGGAAGCTATTCCGGTGTTTGGATATGGCCTACAAAGACGAAAAGCTTTACATA 660
Query 702 CATACTTACAATGGTAGCATCAGAATCTTGGACTTTTCTCTTGGAGACTTGCCTAGACAA 761
| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTACTTCCAATGGTAGCATAAGAATCTTGGACTTTTCTCTTGGAGACTTGCCTAGACAA 720
Query 762 ATCGACAATCATCCATACTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCGTAGGAGG 821
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 721 ATCGACAATCATCCATACTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCATAAGATG 780
Query 822 GGAATGAGACTAACCACGTCTGGAGATGTTGTGATGATCCAATGGGTGACA---GTCACT 878
||||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||
Sbjct 781 GGAATGAGACTAACCACGTCTGGGGATGTTGTGATGATCCAATGCGTGACAACAGGCACT 840
Query 879 CACAAAAGAATCCCGTTCCAAATCTACAAGATGAGTAGCAAAAGAGAGACGAAGGAGTCG 938
|||||||||| |||||||| ||||| |||| ||||||||| | |||||||||||||||
Sbjct 841 CACAAAAGAAGCCCGTTCCGAATCTTCAAGTTGAGTAGCATTACAGAGACGAAGGAGTC- 899
Query 939 TTTCGGGTGCAAGGGTTGGGCGACGACGACGATGCTGCGGACTGGGAGAGAGTGCATTCT 998
|| | | || ||| | | | | | || ||||||| ||||||||||
Sbjct 900 TT-C---T-CA---------CGAGGT-G--G-TA--G-GG--TGGGAGACAGTGCATTCT 936
Query 999 TTCGAGGACGAGGAGTCGTTGGTTTGGGATTTGAGCGTCACTTTGCCAACCAAAGGCGTA 1058
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 937 TTCGAGGACGAGGAGTCGTTGGTTTGGGATTTGAGCGTCACTTTACCAACCAAAGGCGTA 996
Query 1059 TCCGGTATCAAGAAAGATTCCATATATTACTGTCACACTTCTA-A--ATCATCTATTCCG 1115
||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 997 TCCGGAATCAAGAAAGATTCCATATATTACTGTCACACTTCTCTATCATCATCTATTCGG 1056
Query 1116 GAAGT-TGCTACCTATGA-ATTTCCTACGCACAAGATCTCTGCGTATGAGATTCCTAAGC 1173
||| || | | ||||| ||| ||||||||||||||| |||| ||||| ||||||||||
Sbjct 1057 GAAACATG-TGCTTATGAGATT-CCTACGCACAAGATCACTGCATATGACATTCCTAAGC 1114
Query 1174 AGGCTATCAAACCTATTCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTTGTTC 1233
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1115 AGGATATCAAACCTATTCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTCGTTC 1174
Query 1234 CTTGTTTTGGTGC 1246
||||||| |||||
Sbjct 1175 CTTGTTTCGGTGC 1187
> AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356680-3359838
REVERSE LENGTH=2295
Length=2295
Score = 756 bits (409), Expect = 0.0
Identities = 514/563 (91%), Gaps = 14/563 (2%)
Strand=Plus/Plus
Query 2148 AAACATCAGCCT-AAAACTGGTTTCCCCATGGAATCTCTA-GCAGCCTCAGTCCTCACTC 2205
|||||||||||| |||||||| |||||||||||||| | |||||||| || |||||||
Sbjct 1585 AAACATCAGCCTAAAAACTGGCGCCCCCATGGAATCTC-ACGCAGCCTCGGTGCTCACTC 1643
Query 2206 CTTCCGCTTTCTCCAATCTCCAAGCACAGCTTGTGCTTGCAGCTCTCTACGCATCGTTCC 2265
||| || |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 1644 CTTTTGCATTCTCCAAGCTCCAAGAACAGCTTGTGCTTGCTGCTCACTACGCATCGTTCC 1703
Query 2266 AGATGGATGACTGGTATCTCGTGAGGCACCACACAAAACTCAG-TGGAGGAAGAAAAGTG 2324
|||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1704 AGATGGATGAGGGGTATCTCGTGAGGCACCACACAAAACTC-GATGGAGGAAGAAAAGTG 1762
Query 2325 TATTGGGTTCCTCAAGAAGGCATCATAAGCTGCAGTTGCCAACTGTTTGAGTTCTCTGGG 2384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 TATTGGGTTCCTCAAGAAGGCATCATAAGCTGCAGTTGCCAACTGTTTGAGTTCTCTGGG 1822
Query 2385 TTTCTCTGCAGGCACGCACTCCATGTTCTCTCTACCGGAAACTATTTTCCGGTCCCAGAC 2444
|||||||||||||||||||||| ||||||||| || ||||||| ||||| |||||| ||
Sbjct 1823 TTTCTCTGCAGGCACGCACTCCGTGTTCTCTCCACAGGAAACTGTTTTCAGGTCCCTGAT 1882
Query 2445 AGATATCTTCCTCTGAGGTGGCGCAGGATCAGCACGTCGTTTAGCAAGACGTTCAGAAGT 2504
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 AGGTATCTTCCACTTAGGTGGCGCAGGATCAGCACGTCGTTTAGCAAGACGTTCAGAAGT 1942
Query 2505 AACGCTGAGGATCATGGAGAGAGAGTTCAGCTTCTGCAAAATCTGGTTTCGACTCTGGTG 2564
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1943 AACGCTGAGGATCATGGAGAGAGAGTTCAGCTTCTGCAGAATCTGGTTTCGACTCTGGTC 2002
Query 2565 TCCGAACCGTCTAAATCGAAGGAGAGGCTAGATATTGCAACTGAGCAAACCTCCATCCTC 2624
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 TCAGAATCGGCTAAATCGAAGGAGAGGCTAGATATTGCAACTGAGCAAACCTCCATCCTC 2062
Query 2625 TTATCCCGCATCAGAGAGCAGCGGCAGCCTATCTCTTCACTTGCTCTCCGAGACATTTCT 2684
|||||||| ||||||||||||| | | || | || |||||||| || |||||||||||
Sbjct 2063 TTATCCCGTATCAGAGAGCAGC--CTGTCT--C-CT-CACTTGCTATCAGAGACATTTCT 2116
Query 2685 ACT---GTGCAGAGGAATTTTTG 2704
|| |||||||||||||||||
Sbjct 2117 TCTTCTGTGCAGAGGAATTTTTG 2139
Score = 597 bits (323), Expect = 2e-169
Identities = 372/396 (94%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 1524 GAGCTTGAGAAGTGTGTCGAGCTAGGCTTTTTACCATTCACTGAAAAGGATGTCAGGAAT 1583
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 680 GAGCTTGAGAAGTGTGTCGAGCCAGGATTTTTACCATTCACCGAAAAGGATGTCAGGAAT 739
Query 1584 ATGCTTCAGTCCTTCAAGAAACTCGATCCTGAGGATGAGAACATTGATTTCCTGAGGATG 1643
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TTGCTTCAGTCATTCAAGAAACTCGATCCTGAGGATGAGAACATTGATTTCCTGAGGATG 799
Query 1644 TGCCAAAGCATAAAGGAGAAAGACCCTAACTTTAAGTTTGAGTTTACGTTGGATGCAAAT 1703
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 800 TGCCAAAGCATAAAGGAGAAAGACCCTAACTTTAAGTTCGAGTTTACTTTGGATGCAAAT 859
Query 1704 GATAAGCTAGAAATTATTGCCTGGTCATATGCATCTTCCATTCAGTCATATGGAA-TCTT 1762
|||||| |||||| |||||||||||| ||||| ||||||||||||||||||| || ||||
Sbjct 860 GATAAGTTAGAAAATATTGCCTGGTCGTATGCTTCTTCCATTCAGTCATATG-AACTCTT 918
Query 1763 TGGAGATGCTGTAGTTTTCGATACAACACATTGCTTAAGTGCAGTTGAGATGCCGCTTGG 1822
|||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 919 TGGAGATGCTGTTGTTTTCGATACAACACATCGCTTAAGTGCTGTTGAGATGCCACTTGG 978
Query 1823 AATATGGGTTCGAGTTAATAACTATGGTGTGCATTGCTTCTTCTGTTGTGTACTTCTATG 1882
|||||||||| ||||||||||||||||||| | |||||||||| ||||||| |||||| |
Sbjct 979 AATATGGGTTGGAGTTAATAACTATGGTGTCCCTTGCTTCTTCGGTTGTGTGCTTCTACG 1038
Query 1883 GGATGAAAATTTTAGATCGTGGTCATGGGCACTACA 1918
|||||||||||| |||||||||||||||||||||||
Sbjct 1039 GGATGAAAATTTGAGATCGTGGTCATGGGCACTACA 1074
Score = 248 bits (134), Expect = 2e-64
Identities = 193/219 (88%), Gaps = 14/219 (6%)
Strand=Plus/Plus
Query 1940 GAGTTCGAGTTGGGTTGGAAGAGACATGGTGAACTCCTTTGGACT---C-C--ACATA-A 1992
||||| |||||||||||| ||||||||||||||||| |||||||| | | ||| | |
Sbjct 1301 GAGTTTGAGTTGGGTTGG-AGAGACATGGTGAACTCTTTTGGACTGCACACAAACAGACA 1359
Query 1993 -A-C-A-AAC-TGTATGTCGCACATTCCTTGTGTTCTTTACCATACCTGAGAAACCATTT 2047
| | | ||| |||||| | ||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 1360 CATCAACAACTTGTATGCCTCACGTTCCTTGTGGTCTTTACCATACCTGAGAAGCCATTT 1419
Query 2048 TTTAGCTGGAATGACTTTGACTGGCCGATCCAAAGCCAATCAACGCCTTTATTCAGAGGT 2107
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1420 TCTAGCTGGAATGACTTTGACTGGCCGATCCAAAGCC-ATTAACGCCTTTATTCAGAGGT 1478
Query 2108 TCTTGAGCGCACAAACCCGGCTACCTCAATTTGTAGAAC 2146
||||||||||||||||||||||| |||| ||||||||||
Sbjct 1479 TCTTGAGCGCACAAACCCGGCTAGCTCACTTTGTAGAAC 1517
Score = 135 bits (73), Expect = 2e-30
Identities = 82/86 (95%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 1426 TCACAGGACAGAAAGAAAAGACGGAGAT-GCAAAAGGACTTACTAGGCGCTACTTTGTTT 1484
||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 328 TCACAGGACAGAAGGAAAAGACGGAGTTGGC-AAAGGACTTACTAGGCGCTACTTTGTTT 386
Query 1485 GTCACCGTGCTGGTAACACACCTATC 1510
||||||||||||||||||||||||||
Sbjct 387 GTCACCGTGCTGGTAACACACCTATC 412
> AT1G10100.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:3300697-3301489 REVERSE LENGTH=489
Length=489
Score = 213 bits (115), Expect = 8e-54
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 320 TTGTGGGAGTTGGGTCTTGGTCTTTGACAAGGAAATAAATTTCTACATCATTAATCCCTT 379
|||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 349 TTGTGGAAGTTGGGTCTTGGTCTTTGACGAGGAAATCAATTTCTACATCATTAATCCCTT 290
Query 380 CACGCCAGAGCTCATTCGTCTCCCACCTCTTGAATATTCAAACAGCGGCACAAAGTTCGA 439
||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 289 CACGCCACAGCTCATTCGTCTCCCACCTCTTGAATATACAAACAGAGGCACAAAGTTCGA 230
Query 440 GAGACCCGGTAAC 452
|||||||||||||
Sbjct 229 GAGACCCGGTAAC 217
Score = 195 bits (105), Expect = 3e-48
Identities = 128/139 (92%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 51 ACAGATGGTGATACTCCGAATTGGTCGGAACTTGTCACAGACATCTGGTCATTGGTTTTC 110
||||||| || | || ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 487 ACAGATGATG-TTCTTCGAATTGGTCGGAGCTTGTCACAGACATCTTATCATTGGTTTTC 429
Query 111 AAGCACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACTTT 170
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AAGCAGTTTAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACTTT 369
Query 171 GCTTCCAAATCATCCTCAC 189
||||||||||| || ||||
Sbjct 368 GCTTCCAAATCCTCGTCAC 350
> AT1G10130.1 | Symbols: ECA3, ATECA3 | endoplasmic reticulum-type
calcium-transporting ATPase 3 | chr1:3310930-3322213 FORWARD
LENGTH=3478
Length=3478
Score = 178 bits (96), Expect = 3e-43
Identities = 108/114 (95%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 2755 TGGCTCGTTTGAATGCTATAGTACGGTCATTGCCATCAGTCGAGACGCTTGGTTGCACTT 2814
||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1174 TGGCTCGTTTGAATGCTATTGTACGGTCATTACCATCTGTCGAGACGCTTGGGTGCACTA 1233
Query 2815 CTGTAATTTGCAGTGACAAGACTGGAACATTGACTACCAATATGATGTCGGTGT 2868
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1234 CTGTAATTTGCAGTGACAAGACTGGAACATTGACAACCAATATGATGTCGGTGT 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144129627239
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5