BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919769
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09970.2 | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-... 2780 0.0
> AT1G09970.2 | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-like
protein kinase family protein | chr1:3252317-3255654
FORWARD LENGTH=3251
Length=3251
Score = 2780 bits (1505), Expect = 0.0
Identities = 1664/1743 (95%), Gaps = 2/1743 (0%)
Strand=Plus/Plus
Query 33 GCTTCGGAATTTGGAGATTGCCGATAGCAGTTTAACCGGAGAGATTCCGTCGGAGATCTC 92
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||
Sbjct 751 GCTTCGGAATTTGGAGATTTCCGATAGCGGATTAACCGGAGAGATTCCGTCGGAGATTTC 810
Query 93 GAAACTCACCAATCTTTGGCAGTTAGAGCTTTACAACAACTCCTTGACCGGAAAACTTCC 152
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GAAACTTACTAATCTCTGGCAGTTAGAGCTTTACAACAACTCCTTGACCGGAAAACTTCC 870
Query 153 TACCGGATTCGGAAACCTGAAGAATCTGACTTACTTGGATGCTTCAACAAATCTTCTACA 212
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 871 TACCGGATTCGGAAACTTGAAGAATCTGACTTACTTGGACGCTTCAACAAATCTTCTACA 930
Query 213 AGGCGATTTATCGGAGCTCAGGTCTCTGACTAATCTCGTTTCACTACAAATGTTCGAAAA 272
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 931 AGGCGATTTATCGGAGCTTAGGTCTCTGACTAATCTCGTTTCACTACAAATGTTCGAAAA 990
Query 273 CGAATTCTCCGGTGAGATTCCGATGGAGTTTGGCGAATTCAAGGATCTCGTGAATCTCTC 332
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 991 CGAATTCTCCGGTGAGATTCCGCTGGAGTTTGGTGAATTCAAGGATCTCGTGAATCTCTC 1050
Query 333 TCTGTATACCAACAAGTTAACCGGTTCTCTGCCTCAAGGACTCGGTTCACTTGCCGATTT 392
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1051 TCTGTATACAAACAAGTTAACCGGTTCTCTGCCTCAAGGACTCGGTTCACTTGCTGATTT 1110
Query 393 TGATTTCATCGACGCATCAGAGAATCTCTTAACCGGACCTATCCCTCCAGATATGTGCAA 452
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1111 TGATTTCATCGACGCATCAGAGAATCTCTTAACCGGACCGATCCCTCCAGATATGTGCAA 1170
Query 453 GAACGGGAAGATGAAAGCTCTGCTTCTCCTGCAAAACAATCTCACTGGCTCCATCCCTGA 512
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1171 GAACGGGAAGATGAAAGCTCTGCTTCTCCTGCAAAACAACCTCACTGGCTCTATCCCTGA 1230
Query 513 CTCGTACGCTAGCTGTTTGACTCTGGAACGGTTCAGAGTAAGCGAGAAC-TCGCTTAACG 571
|| ||||||| ||||||||||||| ||||||||||||| ||||||||| | || ||||
Sbjct 1231 GTCCTACGCTAACTGTTTGACTCTGCAACGGTTCAGAGTTAGCGAGAACAAC-CTCAACG 1289
Query 572 GAACTGTTCCCGCGGGACTTTGGGGCTTACCGAAGCTCGAGATCATCGATATAGAGATGA 631
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1290 GAACTGTTCCCGCGGGACTTTGGGGATTACCGAAGCTCGAGATCATCGATATAGAGATGA 1349
Query 632 ATAACTTCGAAGGTCCGATCACTGCCGATATAAAGAACGGTAAAATGCTCGGAGCATTGT 691
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1350 ATAACTTCGAAGGTCCAATCACCGCGGATATAAAGAACGGTAAAATGCTCGGAGCGTTGT 1409
Query 692 ATCTAGGGTTCAACAAGTTGTCTGATGAGCTGCCGGAGGAGATAGGTGACACTAAATCTT 751
|||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 1410 ATCTAGGGTTCAACAAGTTGTCTGATGAGCTGCCTGAAGAGATAGGTGACACTGAATCTT 1469
Query 752 TGACTAAGGTTGAGCTTAACAATAACCGGTTTACCGGGAAGATTCCGAGCTCCATTGGGA 811
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1470 TGACTAAGGTTGAGCTTAACAATAACCGGTTTACCGGGAAGATTCCTAGCTCCATTGGGA 1529
Query 812 AACTGAAGGGACTTAGCAGTCTGAAGATGCAGAGCAATGACTTCTCTGGTGAGATACCGG 871
|||| || |||||||||||||| |||||||||||||||| |||||| ||||||||||| |
Sbjct 1530 AACTCAAAGGACTTAGCAGTCTAAAGATGCAGAGCAATGGCTTCTCCGGTGAGATACCTG 1589
Query 872 ACTCGATTGGATCATGCTCGATGCTCAGCGATGTAAACATGGCTCAAAACTCGCTATCCG 931
|||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1590 ACTCGATTGGTTCGTGCTCGATGCTCAGCGATGTCAACATGGCTCAAAACTCGATATCCG 1649
Query 932 GTGAAATCCCGCACACGCTTGGATCTCTTCCGACGCTCAACGCTTTGAATCTTTCAGACA 991
| |||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1650 GAGAAATCCCCCACACGCTTGGATCACTCCCGACGCTCAACGCTTTGAATCTTTCGGACA 1709
Query 992 ATAAGCTCACCGGGAGAATCCCAGAGAGTTTGTCGTCTCTAAGGCTTAGCCTTCTTGATC 1051
||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1710 ATAAGTTGTCTGGGAGAATCCCAGAGAGTTTGTCGTCTTTAAGGCTTAGCCTTCTTGATC 1769
Query 1052 TGTCTAACAACAGATTATCCGGTCGTATCCCTCTGAGTTTGTCATCATATAATGGTAGCT 1111
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 TGTCTAACAACAGATTATCAGGTCGTATCCCTCTGAGTTTGTCATCATATAATGGTAGCT 1829
Query 1112 TCAATGGCAATCCTGGACTCTGTAGCATGACGATCAAATCGTTTAACCGGTGCATAAATC 1171
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1830 TCAATGGCAATCCTGGCCTCTGTAGCACGACGATCAAATCGTTTAACCGGTGCATAAATC 1889
Query 1172 CTTCGAGATCGCATGGAGACACTCGCGTATTCGTGCTGTGTATAGTTTTCGGGTCACTGA 1231
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1890 CTTCGAGATCGCATGGAGACACTCGCGTGTTCGTGTTGTGTATAGTTTTCGGGTTACTGA 1949
Query 1232 TCTTGCTTGCGTCTCTTGTGTTTTTCTTGTACCTGAAGAAAACAGAGAAGAAGGAAGGCC 1291
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1950 TCTTGCTAGCGTCTCTTGTGTTTTTCTTGTACCTGAAGAAAACAGAGAAGAAGGAGGGAC 2009
Query 1292 GTTCGCTTAAACACGAGTCTTGGAGTATAAAGTCATTCCGAAAGATGAGTTTCACTGAAG 1351
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2010 GTTCGCTTAAACACGAATCTTGGAGTATAAAGTCATTCCGAAAGATGAGTTTCACTGAAG 2069
Query 1352 ATGATATCATCGATTCAATCAAAGAAGAGAATTTGATCGGTAGAGGAGGTTGTGGCGATG 1411
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2070 ATGATATCATTGATTCAATCAAAGAAGAGAATTTGATTGGTAGAGGAGGTTGTGGGGATG 2129
Query 1412 TGTACAGAGTAGTACTTGGTGATGGTAAAGAAGTTGCGGTCAAACACATCCGGTGTAGTA 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 TGTACAGAGTAGTACTTGGTGATGGTAAAGAAGTTGCGGTCAAACACATCCGGTGTAGTA 2189
Query 1472 GTACTCAGAAAAATTTCAGCAGTGCAATGCCGATTCTCACTGAACGGGAAGGAAGATCGA 1531
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2190 GTACTCAGAAAAACTTCAGCAGTGCAATGCCGATTCTCACTGAACGGGAGGGAAGATCGA 2249
Query 1532 AGGAGTTTGAAACAGAGGTGCAAACGCTTAGCTCAATACGACACTTAAATGTGGTAAAAC 1591
| ||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 2250 AAGAGTTTGAAACAGAGGTGCAAACGCTTAGTTCGATACGACACTTAAACGTGGTGAAAC 2309
Query 1592 TCTATTGTAGCATCACGAGCGATGACTCAAGCTTGCTGGTGTACGAGTACTTGCCTAATG 1651
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2310 TCTATTGTAGCATCACGAGCGATGACTCGAGCTTGCTGGTGTACGAGTACTTGCCTAATG 2369
Query 1652 GAAGCTTATGGGACATGCTTCACTCTTGCAAGAAATCGAATCTCGGTTGGGAAACACGGT 1711
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2370 GAAGCTTATGGGACATGCTTCACTCTTGCAAGAAGTCGAATCTTGGTTGGGAAACACGGT 2429
Query 1712 ATGATATAGCTCTTGGTGCAGCGAAAGGGCTTGAGTACTTGCATCATGGGTATGAGAGAC 1771
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2430 ATGATATAGCTCTTGGTGCAGCAAAAGGGCTTGAGTACTTGCATCATGGGTATGAGAGAC 2489
Query 1772 CGG 1774
|||
Sbjct 2490 CGG 2492
Score = 752 bits (407), Expect = 0.0
Identities = 449/469 (96%), Gaps = 4/469 (1%)
Strand=Plus/Plus
Query 1773 GGCCAGCAATGGCGGTCCAGATTCCACCCATGTCGTTGCGGGAACCTATGGCTACATAGC 1832
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 2584 GGCCAGCAATGGCGGTCCAGAGTCCACGCATGTCGTTGCGGGAACCTATGGCTACATAGC 2643
Query 1833 T-C--CAGAGTATGGATATGCGTCAAAAGTGACTGAGAAATGCGATGTATATAGCTTCGG 1889
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2644 TCCAGCAGAGTATGGATATGCGTCAAAAGTGACTGAGAAATGCGATGTATATAGCTTCGG 2703
Query 1890 GGTCGTGTTGATGGAGCTGGTCACAGGGAAAAAACCGATAGAGGCAGAGTTTGGAGAGAG 1949
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2704 GGTCGTGTTGATGGAGCTAGTCACAGGGAAAAAACCGATAGAGGCAGAGTTTGGAGAGAG 2763
Query 1950 CAAAGACATAGTGAATTGGGTGAGCAACAATCTGAAGAGCAAAGAGAGTGTGATGGAGAT 2009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2764 CAAAGACATAGTGAATTGGGTGAGCAACAATCTGAAGAGCAAAGAGAGTGTGATGGAGAT 2823
Query 2010 TGTGGACAAGAAGATAGGAGAAATGTATAGAGAAGATGCAATCAAGATACTGAGGATTGC 2069
|||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 2824 TGTGGACAAGAAGATAGGAGAAATGTATAGAGAAGACGCGGTCAAGATGCTGAGGATTGC 2883
Query 2070 AATCCTCTGCACGGCGAGACTTCCTGGACTAAGACCGACGATGAGGAGCGTGGTTCAAAT 2129
||| ||||||| || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2884 GATCATCTGCACCGCAAGACTTCCTGGACTAAGACCGACGATGAGGAGCGTGGTGCAGAT 2943
Query 2130 GATCGAGGACGCGGAACCATGCAGATTGATGGGGATTGTGATCAGCAAAGAGAGTGATGT 2189
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2944 GATCGAGGACGCGGAACCTTGCAGATTGATGGGGATTGTGATCAGCAAAGAGAGTGATGT 3003
Query 2190 GAAGATCAAAGAAATAAGTTGATGATTGAGGGACCAAAGTCACTCTTTT 2238
||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3004 CAAGGTCAAAGAAATAAGTTGATGATTGAGGGACCAA-GTCACTCTTTT 3051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111043605540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5