BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919771
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10010.1 | Symbols: AAP8, ATAAP8 | amino acid permease 8 | c... 1391 0.0
> AT1G10010.1 | Symbols: AAP8, ATAAP8 | amino acid permease 8 |
chr1:3265976-3268726 FORWARD LENGTH=1428
Length=1428
Score = 1391 bits (753), Expect = 0.0
Identities = 1180/1383 (85%), Gaps = 42/1383 (3%)
Strand=Plus/Plus
Query 134 TCGACGACGATGGTCGGGAGAAGAGGACGGGGACGTTTAT-GACGGCGAGCGCCCACATA 192
|||||||||||||||| |||||||| ||||| || ||| | ||||||||| || ||||||
Sbjct 59 TCGACGACGATGGTCGAGAGAAGAGAACGGGAACATTT-TGGACGGCGAGTGCGCACATA 117
Query 193 ATCACGGCGGTTATAGGCTCCGGTGTGTTGTCCTTGTCTTGGGCAATAGCACAGCTTGGT 252
||||||||||| |||||||| || ||| |||| ||| ||||||| |||||||||||||||
Sbjct 118 ATCACGGCGGTCATAGGCTCAGGGGTGCTGTCGTTGGCTTGGGCTATAGCACAGCTTGGT 177
Query 253 TGGGTGGCAGGAACCGTAATTTTGGTCACTTTTGCCAGCATTAATTACTACACATCCACC 312
||||||||||||||| | |||||||| |||| |||| ||||| ||||||||| ||||||
Sbjct 178 TGGGTGGCAGGAACCACAGTTTTGGTCGCTTTCGCCATCATTACTTACTACACGTCCACC 237
Query 313 ATGCTCGCCGACTGTTACCGATCTCCCGACACC-GCACCGGGAACACGGAATTATACA-T 370
||||||||||||||||||| || || ||| || |||| |||||||| || |||| | |
Sbjct 238 TTGCTCGCCGACTGTTACCGTTCGCCGGACTCCATCACC-GGAACACGCAACTATA-ATT 295
Query 371 ACATGGACGTCGTCCGAGCTTACCTTGGTGGTAGGAAA-GTGCAGTTATGTGGACTGGCA 429
|||||| |||||||||| ||||||||||||||| ||| || ||| |||||||| |||||
Sbjct 296 ACATGGGCGTCGTCCGATCTTACCTTGGTGGTA-AAAAGGTTCAGCTATGTGGAGTGGCA 354
Query 430 CAGTACG-GAAGTCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTT 488
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CAGTACGTGAA-TCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTT 413
Query 489 AGTAGCGATCGGAAAAGCAAATTGTTTTCATGACAAGGGACATGATGCGAAATGTTCCT- 547
||||||||| || ||| ||||||||| |||||||||||||||| | ||||||||||| |
Sbjct 414 AGTAGCGATTGGGAAATCAAATTGTTATCATGACAAGGGACATAAAGCGAAATGTTC-TG 472
Query 548 TGTCGAATTATCCATCCATGGCAGCATTTGGGATCGTCCA-ACTTATGCTCAGCCAGATC 606
| ||||||||||||| |||||| ||||||||||||||||| | | || || |||||| |
Sbjct 473 TATCGAATTATCCATACATGGCGGCATTTGGGATCGTCCAGA-TCATTCTGAGCCAGCTT 531
Query 607 CCTAATTTTCACAAACTCTCTTTCCTCTCCATCATCGCCACGGTTATGTCCTTCTGTTAT 666
||||| || ||||| ||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 532 CCTAACTTCCACAAGCTCTCTTTCCTATCCATCATCGCCGCGGTTATGTCCTTCTCTTAT 591
Query 667 GCGTCTATCGGAATCGGCTTATCCATCACCACTGT-GACAAGTGGGAAGGTTGGTAAGAC 725
|||||||||||||| ||| || ||||| | ||||| | ||||||||||| ||||||||||
Sbjct 592 GCGTCTATCGGAATAGGCCTAGCCATCGCTACTGTAG-CAAGTGGGAAGATTGGTAAGAC 650
Query 726 GGGGCTGAC-GGGTACGGTGGTTGGGGTGGACGTAACTGCGTCTGAAAAACTGTGGAGAT 784
| |||| ||| || ||| | || |||||||||||||||||||||||| | |||| ||
Sbjct 651 AGAATTGACAGGG-ACAGTGATAGGTGTGGACGTAACTGCGTCTGAAAAAGTTTGGAAAT 709
Query 785 CGTTTCAAGCCG-TTGGAGACATTGCATTCTCATATGCTTATT-CCATTGTTCTCGTTGA 842
||||||||| | ||||||||||||| || ||||| |||| || ||| | ||||| | ||
Sbjct 710 TGTTTCAAGC-GATTGGAGACATTGCCTTTTCATACGCTT-TTACCACTATTCTCATCGA 767
Query 843 GATCCAGGATACATTGAAATCAACCCCACCGGAGAACAAAGTGATGAAAAAAGCAAGCCT 902
||| ||||| ||||||| ||||| |||||| |||||||||||||||||| |||||| ||
Sbjct 768 GATTCAGGACACATTGAGATCAAGCCCACCAGAGAACAAAGTGATGAAACGAGCAAGTCT 827
Query 903 TG-CTGGAGTCTCCACGACAACTGTTTTCTACATCTTATGTGGTGGCATCGGATATGCTG 961
|| | |||||||| || |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 828 TGTC-GGAGTCTCAACCACAACTGTTTTCTACATCTTGTGTGGTTGCATCGGATATGCTG 886
Query 962 CATTCGGAAACAAAGCCCCTGGTGACCTCCTTACAGACTTTGGTTTTTACGAACCTTACT 1021
| ||||| ||| |||||||||||||| ||||||| || |||||||||||||||||||| |
Sbjct 887 CGTTCGGCAACCAAGCCCCTGGTGACTTCCTTACCGATTTTGGTTTTTACGAACCTTATT 946
Query 1022 GGCTCATCGATTTTGCCAATGCGTGCATCGTTCTCCACCTAATTGCAGCTTATCAGGTGT 1081
|||||||||| ||||||||||| ||||| | |||||| ||||| | || ||||||||||
Sbjct 947 GGCTCATCGACTTTGCCAATGCTTGCATTGCTCTCCATCTAATAGGTGCCTATCAGGTGT 1006
Query 1082 TTGCGCAACCAATTTTCCAGTTTGTTGAGAAGAAA-TGCAACAAAAAGTGGCCAGAAAGC 1140
|||||| || ||||||||||||||||| | ||| ||||||||||| ||||| |||||
Sbjct 1007 ATGCGCAGCCGTTTTTCCAGTTTGTTGAGGA-AAACTGCAACAAAAAATGGCCTCAAAGC 1065
Query 1141 ATTTTCATCACCAGTGAACATTCGATGAATA--TACCATTGATTGGAAAATGTACCA-TC 1197
| |||||||| || ||| | ||| | || | | || ||| ||||||||||| | ||
Sbjct 1066 AATTTCATCAACAAAGAATACTCG-TCAA-AGGTTCCTTTGCTTGGAAAATGT-CGTGTC 1122
Query 1198 AACCTTTTCAGACTA-TTGTGGAGGACATGCTATGTGGTTTTGACTACAGTTGTAGCAAT 1256
||||| |||||||| || ||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1123 AACCTCTTCAGACTGGTT-TGGAGGACATGCTATGTTGTTTTGACAACATTTGTAGCAAT 1181
Query 1257 GATATTCCCCTTCTTCAATGCAATCTTGGGTTTGCTCGGGGCACTCGCGTTCTGGCCACT 1316
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 1182 GATATTCCCCTTCTTCAATGCGATCTTGGGTTTGCTAGGGGCATTCGCGTTCTGGCCACT 1241
Query 1317 CACAGTTTATTTTCCGGTGGCAATGCACATTGAGCAGGC-AAAGGTTAAGAAGTATTCTC 1375
|||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct 1242 CACAGTTTATTTTCCGGTGGCAATGCACATTGCGCAGGCTAAAG-TCAAGAAGTATTCTC 1300
Query 1376 TTCGATGGATAGGG-TTGAAACTCCTTGTATCGCTTTGTTTGATTGTTTCA-CTCCTAGC 1433
| ||||| | || ||||| ||||| |||| | |||| ||||| || || | ||| ||
Sbjct 1301 GTAGATGGTT-GGCCTTGAACCTCCTCGTATTGGTTTGCTTGATCGTCTCGGC-CCTTGC 1358
Query 1434 CACAATAGGATCCATTGTCGGCTTGAT-AACTAGTGTCAAGGCATACAAGCCTTTCAACA 1492
| | |||||||||| | ||||| || || |||||||||| |||||||||| ||||| |
Sbjct 1359 CGCCGTAGGATCCATCATTGGCTTAATTAA-TAGTGTCAAGTCATACAAGCCCTTCAAGA 1417
Query 1493 ATT 1495
|||
Sbjct 1418 ATT 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5