BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919773
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10020.1 | Symbols: | Protein of unknown function (DUF1005)... 2372 0.0
> AT1G10020.1 | Symbols: | Protein of unknown function (DUF1005)
| chr1:3269604-3271987 REVERSE LENGTH=1976
Length=1976
Score = 2372 bits (1284), Expect = 0.0
Identities = 1373/1417 (97%), Gaps = 2/1417 (0%)
Strand=Plus/Plus
Query 9 GTTGCGATTGAAATGGATCCTTGTCCATTCATCCGTCTTACGATCGGGAATCTAGCTTTG 68
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 244 GTTGCGATTGAAATGGATCCTTGTCCATTCATCCGTCTTACAATCGGGAACCTAGCTTTG 303
Query 69 AAAGTTCCTTTAGCGGCGAAGACTACGAGCTCCGTCGTGCATCCGTCGTCTTCTCCTTGT 128
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 304 AAAGTTCCGTTAGCGGCGAAGACAACGAGCTCCGTCGTGCATCCGTCGTCTTCTCCTTGT 363
Query 129 TTTTGTAAAATCAAACTCAAAAACTTCCCGCCGCAAACCGCCGCAATCCCGTACATTCCT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTTTGTAAAATCAAACTCAAAAACTTCCCGCCGCAAACCGCCGCAATCCCGTACATTCCT 423
Query 189 CTGGAGACGACTCAGTTTCCGGAGATCCAAACCCTAGCCGCCACGTTTCATCTCAGCAGC 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TTGGAGACGACTCAGTTTCCGGAGATCCAAACCCTAGCCGCCACGTTTCATCTCAGCAGC 483
Query 249 TCCGATATTCAACGCTTAGCTTCCAGATCTATTTTTACTTCTAAGCCATGTCTTAAGATT 308
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 484 TCCGATATTCAACGCTTAGCTTCCAGATCTATATTTACTTCTAAGCCTTGTCTTAAAATT 543
Query 309 TTGATCTACACCGGAAGAGCCGGCGCTGCTTGCGGCGTACACTCCGGTCGTCTTCTGGCG 368
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTGATCTACACTGGAAGAGCCGGCGCTGCTTGCGGCGTACACTCCGGTCGTCTTCTGGCG 603
Query 369 AAAGTCTCCGTACCGTTGGATCTATCTGGTACGCTATCTAAACCGTGCGTCTTCCACAAC 428
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 604 AAAGTCTCCGTACCGTTGGATCTATCTGGTACGCAATCGAAACCGTGCGTCTTCCACAAC 663
Query 429 GGATGGATATCAGTCGGAAAAGGAGCTGGGAAATCGTCGTCGTCGGCTCAGTTTCACCTG 488
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 664 GGATGGATATCAGTCGGAAAAGGAGCTGGAAAATCGTCGTCGTCTGCTCAGTTTCACCTG 723
Query 489 AATGTGAAGGCGGAGCCTGATCCTAGATTCGTTTTTCAGTTCGACGGCGAGCCTGAATGT 548
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 724 AATGTGAAGGCGGAGCCTGATCCTAGATTCGTTTTTCAGTTTGACGGCGAGCCTGAATGT 783
Query 549 AGTCCTCAAGTCGTTCAGATTCAAGGAAATATCCGGCAACCAGTTTTCACATGCAAATTC 608
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 784 AGTCCTCAAGTCGTTCAGATTCAAGGCAATATCCGGCAACCAGTTTTCACATGCAAATTC 843
Query 609 AGTTGCCGGCACACCGGTGATCGTACTCAGAGATCAAGATCATTGCCGACTGAGACAAGT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGTTGCCGGCACACCGGTGATCGTACTCAGAGATCAAGATCATTGCCGACTGAGACAAGT 903
Query 669 GTGCCACGGAGCTGGCTAAACTCGTTCGGGAGTGAGAGAGAACGTCCTGGGAAAGAGCGA 728
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GTTTCACGGAGCTGGCTAAACTCGTTCGGGAGTGAGAGAGAACGTCCTGGGAAAGAGCGT 963
Query 729 AAAGGATGGTCCATAACAGTTCATGACTTGTCCGGTTCTCCAGTGGCCATGGCTTCAATC 788
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 964 AAAGGATGGTCCATAACAGTCCATGACTTGTCCGGTTCACCAGTGGCCATGGCGTCAATC 1023
Query 789 GTCACTCCGTTCGTTGCATCTCCTGGAACCGATCGTGTGAGCCGGTCAAACCCTGGGTCA 848
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GTCACTCCATTCGTGGCATCTCCTGGAACCGATCGTGTGAGCCGGTCAAACCCTGGGTCA 1083
Query 849 TGGCTTATACTGCGTCCCGGAGATTGTACCTGGAGACCGTGGGGGAGACTCGAGGCATGG 908
||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||
Sbjct 1084 TGGCTTATACTGCGTCCCGGAGACTGTACCTGGAGACCGTGGGGAAGACTTGAAGCATGG 1143
Query 909 CGGGAACGCGGTGGAGCCACTGATGGTCTCGGTTACAGATTCGAACTCATCCCAGATGGA 968
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1144 CGGGAACGCGGTGGAGCCACTGATGGTCTAGGTTACAGATTCGAACTCATCCCAGACGGA 1203
Query 969 TCTAGCGGTGCAGGAATCGTGCTTGCGGAGTCAACCATAAGTTCTCACAGAGGTGGGAAA 1028
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1204 TCAAGCGGTGCAGGAATCGTGCTTGCGGAATCAACCATAAGTTCTCACAGAGGTGGGAAA 1263
Query 1029 TTCTCAATCGAATTGGGATCGTCGTCTTCTTCATCGTCGCCAACAAGTG-GCGTGAACCG 1087
||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 1264 TTCTCAATCGAGTTGGGATCGTCGCCTTCTTCATCGTCGCCAACAAGTGTG-GTGAACCG 1322
Query 1088 ATCAAGAAGCCGCAGAGGTGGGAGCAATGGAAGCGGTGGAGGAGCATCGCCGGCGAATAG 1147
||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1323 ATCGAGAAGCCGTAGAGGTGGGAGTAGTGGAAGCGGTGGAGGAGCATCGCCGGCGAATAG 1382
Query 1148 TCCGAGAGGAGGGAGCGGAGATTACGGTTACGGATTGTGGCCGTGGAACGTGTACAAAGG 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 TCCGAGAGGAGGGAGCGGAGATTACGGTTACGGATTGTGGCCGTGGAACGTGTACAAAGG 1442
Query 1208 GTTTGTGATGTCAGCAAGTGTGGAAGGTGAAGGGAAATGTAGTAAACCTTGTGTAGAGGT 1267
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1443 GTTTGTGATGTCAGCAAGTGTGGAAGGTGAAGGGAAATGTAGTAAGCCTTGTGTAGAGGT 1502
Query 1268 GAGTGTGCAGCACGTTAGCTGTATGGAAGATGCGGCTGCTTACGTAGCGCTTTCTGCAGC 1327
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1503 GAGTGTGCAGCACGTTAGCTGTATGGAAGATGCGGCTGCTTACGTGGCGCTTTCTGCAGC 1562
Query 1328 CATTGATCTTAGTATGGATGCTTGCAGGTTGTTTAATCAACGGATGAGGAAAGAGCTTTG 1387
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1563 CATTGATCTTAGTATGGATGCTTGCAGGCTGTTTAATCAACGGATGAGGAAAGAGCTTTG 1622
Query 1388 CCATGAGTCACTGAGCTGAAGAAAAGATAAGAATTTT 1424
||||||||||||||||||||||||||| ||| |||||
Sbjct 1623 CCATGAGTCACTGAGCTGAAGAAAAGACAAGGATTTT 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70280763000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5