BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919779
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10070.1 | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino ... 2006 0.0
> AT1G10070.1 | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino
acid transaminase 2 | chr1:3288087-3290471 FORWARD LENGTH=1642
Length=1642
Score = 2006 bits (1086), Expect = 0.0
Identities = 1159/1195 (97%), Gaps = 2/1195 (0%)
Strand=Plus/Plus
Query 15 AAGAAGATGATCAAAGCAATCTCATCTCTACGCAAAACTCTGGTTCTACCTCTTCATTTA 74
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 163 AAGAAGATGATCAAAACAATCACATCTCTACGCAAAACTCTGGTTCTACCTCTTCATTTA 222
Query 75 CATATTCGTACGCTACAAACTTTCGCTAAGTACAACGCACAAGCTGCCTCGGCCTTGCGA 134
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 223 CATATTCGTACGCTACAAACTTTCGCCAAGTACAACGCACAAGCTGCATCGGCTTTGCGA 282
Query 135 GAAGAGCGTAAGACACCTCTTTATCAAAATGGAGATGATGAATATGTGGATTTGGATTGG 194
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 283 GAAGAGCGTAAGAAACCTCTTTATCAAAATGGAGATGATGTATATGCGGATTTGGATTGG 342
Query 195 GATAATCTCGGGTTTGGTCTAACTCCAGCTGATTACATGTATGTCATGAAATGCTCAAAA 254
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 343 GATAATCTCGGGTTTGGTCTAAATCCAGCTGATTACATGTATGTCATGAAATGCTCAAAA 402
Query 255 GACGGCGAATTCACTCAAGGAGAACTTAGTCCCTATGGGAATATTCAGCTAAGTCCTTCT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GACGGCGAATTCACTCAAGGAGAACTTAGTCCCTATGGGAATATTCAGCTAAGTCCTTCT 462
Query 315 GCTGGAGTCTTAAACTATGGACAGGCGATATACGAAGGTACAAAAGCATACAGGAAAGAA 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GCTGGAGTCTTAAACTATGGACAGGCGATATACGAAGGTACAAAAGCATACAGGAAAGAA 522
Query 375 AATGGGAAGCTTCTTTTGTTTCGCCCTGATCACAACGCTCTCCGGATGAAGCTTGGCGCT 434
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 523 AATGGGAAGCTTCTTTTGTTTCGTCCGGATCACAACGCTATCCGGATGAAGCTTGGCGCT 582
Query 435 GAACGGATGCTCATGCCTTCTCCTTCGATTGATCAGTTTGTTAATGCAATTAAACAAACC 494
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 583 GAACGGATGCTCATGCCTTCTCCTTCGGTTGATCAGTTTGTTAATGCAGTTAAACAAACC 642
Query 495 GCTCTTGCAAACAAGCGTTGGGTTCCTCCTTCAGGAAAAGGGACTTTGTACATTAGGCCT 554
|||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 643 GCTCTTGCAAACAAACGTTGGGTTCCTCCTGCAGGGAAAGGGACTTTGTACATTAGGCCT 702
Query 555 TTGTTGATGGGAAGTGGTCCAATTCTTGGTTTAGGTCCTGCACCTGAATTTACATTCATT 614
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 703 TTGTTGATGGGAAGTGGTCCAATACTTGGTTTAGGTCCTGCACCTGAATATACATTCATT 762
Query 615 GTCTATGCATCTCCAGTTGGTAACTACTTCAAGGAAGGGATGGCTGCTCTTAACCTCTAT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GTCTATGCATCTCCAGTTGGTAACTACTTCAAGGAAGGGATGGCTGCTCTTAACCTCTAT 822
Query 675 GTTGAGGAAGAATATGTCCGAGCAGCTCCTGGTGGAGCTGGAGGTGTCAAGAGCATCACA 734
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 823 GTTGAGGAAGAATATGTCCGAGCGGCTCCTGGTGGAGCTGGAGGCGTCAAGAGCATCACA 882
Query 735 AATTATGCACCCGTTTTGAAAGCACTGAGCAGAGCCAAGAGTCAGGGGTTTTCAGACGTT 794
|||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 883 AATTATGCGCCAGTTTTGAAAGCACTGAGCAGAGCCAAGAGTCGGGGGTTTTCAGACGTT 942
Query 795 CTTTATCTCGACTCTGTCAAGAAGAAGTATTTAGAGGAGGCTTCTTCTTGCAACGTCTTT 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 943 CTTTATCTCGACTCTGTCAAGAAGAAGTACTTAGAGGAGGCTTCTTCTTGCAACGTCTTT 1002
Query 855 GTTGTCAAGGGTCGGACAATCTCAACTCCTGCAACTAATGGAACAATTCTTGAAGGAATT 914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1003 GTTGTCAAGGGTCGGACAATCTCAACTCCTGCAACTAATGGAACAATTCTTGAAGGGATT 1062
Query 915 ACGCGGAAAAGTGTGATGGAGATCGCAAGTGATCAAGGGTATCAGGTAGTAGAGAAGGCA 974
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1063 ACGCGGAAAAGTGTGATGGAGATCGCAAGTGATCAAGGTTATCAGGTAGTAGAGAAGGCA 1122
Query 975 GTTCATGTGGATGAAGTAATGGATGCAGATGAAGTTTTTTGCACCGGAACTGCCGTAGTA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1123 GTTCATGTGGATGAAGTAATGGATGCAGATGAAGTTTTTTGCACCGGAACTGCTGTAGTA 1182
Query 1035 GTTGCTCCTGTGGGCACTATAACATATCAGGACAAAAGAGTAGAGTATAAAACCGGGGAT 1094
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1183 GTTGCTCCCGTGGGCACTATCACATATCAGGAAAAAAGAGTAGAGTATAAAACCGGGGAT 1242
Query 1095 GAATCTGTCTGCCAGAAACTGCGTTCAGTCCTTGTCGGTATCCAGACAGGATTGATTGAA 1154
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1243 GAATCTGTCTGCCAGAAACTGCGTTCAGTCCTCGTAGGTATCCAGACAGGATTGATTGAA 1302
Query 1155 GATAACAAGGGATGGGTCACAAATATCAACTGAA-AA-AACAATCTTCAATATTT 1207
||||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 1303 GATAACAAGGGATGGGTCACAGATATCAACTGAAGAATAACAATCTTCAATATTT 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5