BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919783
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1921 0.0
AT1G10100.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 97.1 3e-19
> AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3304039-3306824 REVERSE LENGTH=2130
Length=2130
Score = 1921 bits (1040), Expect = 0.0
Identities = 1122/1161 (97%), Gaps = 8/1161 (1%)
Strand=Plus/Plus
Query 3 TGTTGTCGAAGCAGAGGAATGGGTGGTGAGAGTAATG-A--AGGAGAGATGGGTTTTAAG 59
|||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 823 TGTTGTTGAAGCAGAGGAATGGGTGGTGAGAGTAATGAAGGAGGAGAGATGGGCTTTAAG 882
Query 60 CATGGAGATGATGAGAGTGGTGGGATCTCAAGAGTTGGAATTACTTCAATGCCCTTGTAT 119
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 883 CATGGAGATGATGAGAGTGGTGGGATCTCTAGAGTTGGAATTACATCAATGCCCTTGTAT 942
Query 120 GCAAAGGCAGATCCTTTCTTCTCTTCTGCAGATTGGGATCCAGTTGTCAATGCTGCTG-- 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GCAAAGGCAGATCCTTTCTTCTCTTCTGCAGATTGGGATCCAGTTGTCAATGCTGCTGCT 1002
Query 178 G-TGGCTTCTCAAGCTCTCATTACCATCCTTCAATGGCGATGGATAATCCAGGGATGAGT 236
| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1003 GCTGGCTTCTCCAGCTCTCATTACCATCCTTCCATGGCGATGGATAATCCAGGGATGAGT 1062
Query 237 TGCTTCTCTCATTACCAACCCGGTTCTGGTTCCGGTTTTGCAGCAGACATGCCTGCTAGT 296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1063 TGCTTCTCTCATTACCAACCCGGTTCTGTTTCCGGTTTTGCAGCAGACATGCCTGCTAGT 1122
Query 297 CTTCTTCCGTTTGGTGATTGTGGAGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAG 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1123 CTTCTTCCGTTTGGTGATTGTGGTGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAG 1182
Query 357 AAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCAGGTTTCA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCAGGTTTCA 1242
Query 417 GATGATGCTGTTCTTGGTGCTTCCCCAATTGGGAAAAGAAGGCTACCTGAAGCCGAATCA 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1243 GATGATGCTGTTCTTGGTGCTTCCCCAGTTGGGAAAAGAAGGCTACCTGAAGCCGAATCA 1302
Query 477 CAATGGAACAAGAAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGGGGAAGTGATCAG 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1303 CAATGGAACAAGAAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGGGGAAATGATCAG 1362
Query 537 AGCCAGAAGAAACACAAGAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAA 596
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 AGCCAGAAGAAGCATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAA 1422
Query 597 AGTGAAGAAGCACCCAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTAAAGCCACT 656
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1423 AGTGAAGAAGCACCGAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACT 1482
Query 657 AATAGTCACAGTCTTGCAGAGAGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGATTG 716
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1483 AATAGTCACAGTCTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGATTG 1542
Query 717 CTTCAAGAACTTGTTCCTGGATGCAACAAGATCACCGGGAAAGCGGTTATGCTCGATGAA 776
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1543 CTTCAAGAACTTGTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAA 1602
Query 777 ATCATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCG 836
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 ATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCG 1662
Query 837 ACGGTGAATCCAGAAATCAACATTGATATAGACAGGATTCTTGCCAAAGATCTTCTGCAA 896
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1663 ACGGTGAATCCAGAGATCAATATTGATATAGACAGGATTCTCGCCAAAGATCTTCTGCAG 1722
Query 897 TCAAGAGACAGAAACACTCCTACACTCGGGCTGAATCCTTTTAGC-GGTTTTCAAGGGAC 955
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1723 TCAAGAGACAGAAACACTCCTACACTCGGGCTGAATCCTTTT-GCCGGTTTTCAAGGGAA 1781
Query 956 CATACCGAACCTTTGTACCACCACAAATCCACAATACAACCCATTACCTCAGACAACACT 1015
|||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1782 CATACCAAACCTTTCTGCCACCACAAATCCACAATACAACCCACTACCTCAGACAACACT 1841
Query 1016 AGAGAGTGAACTACAAAACCTTTACCAGATGGGGTTCGTCTCAAATCCAACGACTATGTC 1075
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1842 AGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTC 1901
Query 1076 CAGTTTCTCACCTAATGGTCGATTGAAACCTGAGCTCTAGTACTTAAAGGACACGGAAAA 1135
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1902 CAGTTTCTCACCTAATGGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAA 1961
Query 1136 TTTGCAGGGAGTTTGTATAGA 1156
|||||||||||||||||||||
Sbjct 1962 TTTGCAGGGAGTTTGTATAGA 1982
> AT1G10100.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:3300697-3301489 REVERSE LENGTH=489
Length=489
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 761 GGTTATGCTCGATGAAATCATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAG 815
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 162 GGTTATGCTCGATGAAATCATCAACTATGTTCAGTCATTGCAACAACAAGTTGAG 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5