BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919785

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10140.1 | Symbols:  | Uncharacterised conserved protein UCP...   848    0.0  


> AT1G10140.1 | Symbols:  | Uncharacterised conserved protein UCP031279 
| chr1:3322802-3323548 REVERSE LENGTH=747
Length=747

 Score =  848 bits (459),  Expect = 0.0
 Identities = 513/539 (95%), Gaps = 3/539 (1%)
 Strand=Plus/Plus

Query  1    aaaaaaaaacaaaaaCAGAGCATGAAACAAAACCAGAACAAGTTCTTGAGAATAATCTCA  60
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct  55   AAAAAAAAACAAAAACAGAGGATGAAACAAAACCAGAGCAAGTTCTTGAGAATAATCTCA  114

Query  61   ACACCTCTAAGAGCTTTAGGCAAAGCACGTGATTTCTACGTGAGAAGCATCACCGGTTGC  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  115  ACACCTCTAAGAGCTTTAGGCAAGGCACGTGATTTCTACGTGAGAAGCATCACCGGTTGC  174

Query  121  GCAGCTCGGACTCAATATtcctcctccgcctccgtctccgctccttttcctagaagccgg  180
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  175  GCAGCTCGTACTCAATATTCCTCCTCCGCCTCCGTCTCCGCTCCTTTTCCAAGAAGCCGG  234

Query  181  agctcctcctccgccgccttctcctcctccgcttcatccCGGAGAGCCACCGATTTCGGG  240
            |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct  235  AGCTCCTCCTCCGCCGCCTTCTCCTCCTCCGCATCATCCCGGAGAACCACCGATTTCGGG  294

Query  241  ATAGATGAAGATTACAGCGAGCTAGTGAGAGCTGCGTCGGTGAGGAGTTTAGGGCACAAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  ATAGATGAAGATTACAGCGAGCTAGTGAGAGCTGCGTCGGTGAGGAGTTTAGGGCACAAG  354

Query  301  AATGAGATAGACATGTTGTTACAAGAGAAGCTGCAACAACAGAGGCAACAGAAGCAAGGA  360
            |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct  355  AATGAGATAGACATGTTGATACAAGAGAAGCTGCAACAGCAGAAGCAACAGAAGCAAGGA  414

Query  361  GGGTTACCTAAGAGCTCGAGTGTTGGGATGGCGAAGATAGAGGAAGAGGAAGAAACAGAG  420
            ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  415  GGGTTGCCTAAGAGCTCGAGTGCTGGGATGGCGAGGATAGAGGAAGAGGAAGAAACAGAG  474

Query  421  GAAGGCTCTGTAAATCCGAAGATGAAGAAGACTAAGAAAGTCTCTGATCTTTTGTATCCT  480
            ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  475  GAAGGATCTGTGAATCCGAAGGTGAAGAAGACTAAGAAAGTCTCTGATCTTTTGTATCCT  534

Query  481  CGTAGCAAATCCTACGCTGTTACTGGTAG--CCC-TAAATTGTAATTTCTCTTCTTCTT  536
            ||||||||||| ||||| ||||||  |||  ||| ||  |||||| |||||||||||||
Sbjct  535  CGTAGCAAATCTTACGCCGTTACTACTAGTACCCCTATCTTGTAACTTCTCTTCTTCTT  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5