BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919799

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 | chr1:...   422    1e-117


> AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356680-3359838 
REVERSE LENGTH=2295
Length=2295

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 256/270 (95%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  47    CGACTGGAAAGCTGAATTCCACCGCCTCTACCATCTGGAATCCGTGGAGGAGTTCGAGTT  106
             ||||||||||||||||||  | ||||||||||||||||||||||| |||||||| |||||
Sbjct  1252  CGACTGGAAAGCTGAATTTTATCGCCTCTACCATCTGGAATCCGTTGAGGAGTTTGAGTT  1311

Query  107   GGGTTGGAGAGATATGGTGAACTCTTTTGGACTGCACACAAGCAGACACATAAACAATTT  166
             |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct  1312  GGGTTGGAGAGACATGGTGAACTCTTTTGGACTGCACACAAACAGACACATCAACAACTT  1371

Query  167   GTATGCCTCACGTTCCTTGTGGTCTTTACCATACCTGAGAAGCCATTTTCTAGCTGGAAT  226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1372  GTATGCCTCACGTTCCTTGTGGTCTTTACCATACCTGAGAAGCCATTTTCTAGCTGGAAT  1431

Query  227   GACTTTGACTGGCCGATCGAAAGCCATTAACGCCTTTATTCAAAGGTTGTTGAGCGCACA  286
             |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct  1432  GACTTTGACTGGCCGATCCAAAGCCATTAACGCCTTTATTCAGAGGTTCTTGAGCGCACA  1491

Query  287   AATCCTGCTAGCTCACTTTGTAGAACAAGT  316
             || || ||||||||||||||||||||||||
Sbjct  1492  AACCCGGCTAGCTCACTTTGTAGAACAAGT  1521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5