BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919808
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2161 0.0
> AT1G10330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:3388747-3390150 FORWARD LENGTH=1404
Length=1404
Score = 2161 bits (1170), Expect = 0.0
Identities = 1325/1400 (95%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 21 ATGCGTTGTACTTCCTTCTCGAGTTTCAATTTTTCTCTTGAAGACGCACTTCATCTTCTC 80
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 ATGCGTTGTACTTCCTTCTCAAGTTTCAGTTTGTCTCTTGAAGACGCACTTCATCTTCTC 60
Query 81 CAACGTTTCTTATACTCCTCAAACCAGATTAAGCAGATTCACGCTGTCCTCTTT-ACCAG 139
|||||||||||||||||||||||||||||||||||||||||| | || || ||| |||||
Sbjct 61 CAACGTTTCTTATACTCCTCAAACCAGATTAAGCAGATTCACACAGTTCT-TTTGACCAG 119
Query 140 CAAAGCATTGGTTGCTTCGAGATGGAAGACGAAATGCGTCTACAACACTCTCATTCGATC 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAACGCATTGGTTGCTTCGAGATGGAAGACGAAATGCGTCTACAACACTCTCATTCGATC 179
Query 200 TTATCTCACTACAGGACAATACAAGACTTCTCTTGCTCTCTTCACTCATATGCTTGCAAG 259
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTATCTCACTACAGGAGAATACAAGACTTCTCTTGCTCTCTTCACTCATATGCTTGCAAG 239
Query 260 CGAAATCCAACCAAATAACCTCACTTTCCCTTCACTGATTAAAGCAGCTTGCTCATCTTT 319
| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 CCATGTCCAACCAAATAACCTCACTTTCCCTTCTCTGATTAAAGCAGCTTGCTCATCTTT 299
Query 320 CTCTGTTTCGTCA-GGTGTTGCCTTACATGGCCAAGCTTTTCGAA-GAGGTGTCCTATGG 377
||||||||| | | || ||||||||||||||||||||| || || | ||| | ||||||
Sbjct 300 CTCTGTTTC-TTATGGCGTTGCCTTACATGGCCAAGCTCTT-AAACGGGGTTTTCTATGG 357
Query 378 GACCCATTTGTTCAGACTTCTTTTGTTCGGTTCTATGGTGAAGTTGGTGATTTGAAGAGC 437
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 358 GATCCATTTGTTCAGACTTCTTTTGTCCGGTTCTATGGTGAAGTTGGTGATTTGGAGAGC 417
Query 438 TCGAGGAAGATGTTTGATGATATTTTAGACCCTTGTGTTGTAGCTTGTAACAGTTTGCTT 497
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TCGAGGAAGATGTTTGATGATATTTTAAACCCTTGTGTTGTAGCTTGTAACAGTTTGCTT 477
Query 498 GACGCTTGTGGACGAAACGGAGAGATGAATTCTGCTTTCGAGTTA-TTTCAGAGAATGCC 556
|||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||
Sbjct 478 GACGCTTGTGGAAGAAACGGAGAGATGGATTATGCTTTCGAG-TATTTTCAGAGAATGCC 536
Query 557 TGTAACTGATGTGGTCTCTTGGACCACTGTTATCAACGGGTTTAGTAAGAATGGGTTTCA 616
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 537 TGTAACTGATGTGGTCTCTTGGACCACTGTTATCAACGGGTTTAGTAAGAAAGGGTTACA 596
Query 617 CGCCAAAGCTTTAATGGTTTTTGGTGAGATGATACAGAATCAGCGTGCGGTAATAACACC 676
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 CGCCAAAGCTTTAATGGTTTTTGGTGAGATGATACAGAATGAGCGTGCGGTAATAACACC 656
Query 677 GAATGAGGCTACTTTCGTTTGTGTACTTTCTTCATGTGCTAATTTTGATCAAGGAGGTAT 736
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TAACGAGGCTACTTTCGTAAGTGTACTTTCTTCATGTGCTAATTTTGATCAAGGAGGTAT 716
Query 737 TCGATTGGGGAAGCAGATTCATGGATATATTATGACG-AAAGAGATCATCCTTACTACTA 795
|||| ||||||||||||||||||||||| |||||| | ||||||||||| |||||||| |
Sbjct 717 TCGACTGGGGAAGCAGATTCATGGATATGTTATGA-GTAAAGAGATCATTCTTACTACAA 775
Query 796 CTTTGGGTACTGCTTTGCTTGATATGTATGGAAAAGCTGGTGACTTGGAGATGGCATTGA 855
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 CTTTGGGTACTGCTTTGCTTGATATGTATGGAAAAGCCGGTGACTTGGAGATGGCATTGA 835
Query 856 CCATTTTCCATCAAATTCGTGATAAGAAAGTTTGCGCTTGGAATGCAATAATATCAGCTC 915
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 CCATTTTTGATCAAATTCGTGATAAGAAAGTTTGCGCTTGGAATGCGATAATATCAGCTC 895
Query 916 TTGCCTCCAATGGTAGACCTAAGCAAGCGCTGGAGATGTTTGAGATGATGAAATCAAGCA 975
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTGCCTCCAATGGTAGACCTAAGCAAGCGCTGGAGATGTTTGAGATGATGAAATCAAGCT 955
Query 976 ATGTGCATCCGAATGGGATCACTTTACTTGCAATACTCACGGCTTGTGCTCGATATAAAC 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 956 ATGTGCATCCGAATGGGATCACTTTACTTGCAATACTCACGGCTTGTGCTCGATCTAAAC 1015
Query 1036 TTGTGGACTTAGGTATCCAGTTGTTCTCTTCCATATGTAGTGAGTTCAAGATCATTCCAA 1095
||||||| |||||||| |||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 1016 TTGTGGATTTAGGTATTCAGTTGTTCTCTTCTATATGTAGCGAGTACAAGATCATTCCAA 1075
Query 1096 CATCAGAGCATTACGGTTGCATTGTTGATCTCATAGGCAGAGCTGGACTATTGGTTGACG 1155
||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 CATCAGAACATTACGGTTGCGTTGTTGATCTCATTGGCAGAGCTGGACTATTGGTTGACG 1135
Query 1156 CTGCCAATTTCATTAAAAATTTGCCATTTGAGCCTGATGCTTCTGTTCTCGGAGCTCTTT 1215
| |||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 1136 CAGCCAATTTCATTCAAAGTTTGCCCTTCGAGCCTGATGCTTCTGTTCTCGGAGCTCTTT 1195
Query 1216 TGGGCGCTTGCAAGATTCATGAGAATGCTGAATTAGGAAATAAAGTAGGTAAACAGCTTA 1275
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1196 TGGGCGCTTGCAAGATTCATGAGAATACTGAATTAGGAAATACAGTAGGTAAACAGCTTA 1255
Query 1276 TTGTACTGCAACCTCAACACTGTGGCCAGTATGTGGCATTGTCGATGTTAAATGCTTTGG 1335
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1256 TTGGACTGCAACCTCAACACTGTGGCCAGTATGTGGCATTGTCGACGTTCAATGCTTTGG 1315
Query 1336 ATAGCAATTGGTCAGAAGCAGAACAGATGAGGAAAGCCATGATAGAAGCTGGAATTCGGA 1395
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1316 ATAGCAATTGGTCAGAAGCAGAAAAAATGAGGAAAGCCATGATAGAAGCTGGAATTCGGA 1375
Query 1396 AAATCCCTGCTTATAGTGTG 1415
||||||||||||| ||||||
Sbjct 1376 AAATCCCTGCTTACAGTGTG 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5