BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919813
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10380.1 | Symbols: | Putative membrane lipoprotein | chr1:... 1417 0.0
> AT1G10380.1 | Symbols: | Putative membrane lipoprotein | chr1:3400606-3402324
FORWARD LENGTH=1232
Length=1232
Score = 1417 bits (767), Expect = 0.0
Identities = 889/947 (94%), Gaps = 11/947 (1%)
Strand=Plus/Plus
Query 3 CTGAAACGTCTAGCTAGCATGAGTTTGAAGTGttcttcttcttctttctttttcgttctc 62
|||||| ||||||| | |||||||||||| |||||||||||||||||||| || |||||
Sbjct 85 CTGAAAGGTCTAGC-A-AATGAGTTTGAAGCGTTCTTCTTCTTCTTTCTTTATCTTTCTC 142
Query 63 tttttcttcttcctt-ctttcttctCATGTCTCCTCACAAGCTTGCCAAAAAACATGCGG 121
|||| |||||| ||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 143 TTTTCCTTCTT-CTTCCTCTCTTCTCATGTCTCCTCACAAGCCTGCCAAAAAACATGCGG 201
Query 122 CCAAATACCCATCAAGTACCCGCTCGGAACCGGGTCAGGTTGCGGTGACCCACGTTTCAC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CCAAATACCCATCAAGTACCCGCTCGGAACCGGGTCAGGTTGCGGTGACCCACGTTTCAC 261
Query 182 ACGTTACATCACGTGCGACCCGGACCAACAGACTTTGACGCTCACCACCCACACAGGCTG 241
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 262 ACGTTACATCACGTGTGACCCTGACCAACAGACTTTGACGCTCACCACCCACACAGGCAG 321
Query 242 TTACCCTATCAGTTCCGTCGACTACGCCAAGCAAGAGATCTACGTCACCGACCCGTCCAT 301
||||||||||| ||| |||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 322 TTACCCTATCACTTCTGTCGACTACGCCAAACAAGAGATCTACGTCACTGATCCGTCCAT 381
Query 302 GTCCACGTGTGCATGTACCCGACCCAGCCATGGATTCGGGTTGGATTGGGACGCTCCGTT 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GTCTACGTGTGCATGTACCCGACCCAGCCATGGATTCGGGTTGGATTGGGACGCTCCGTT 441
Query 362 TTCTTTCCATGACGACACCGTTTTCACGCTCCTTGACTGTTCCGTAGACGAATCCCCTGT 421
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 442 TTCTTTCCATGACGACACCGTTTTTACGCTCCTTGACTGTTCCGTAGACGAATCCCCTGT 501
Query 422 TTTCACGCCGTTAAGTAACGGTAGCGGACGTGTCTCCCTCTGTGACCGTCAAAGCTCCTC 481
||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 502 ATTCACACCGTTAAGTAACGGTAGCGGACGTGTTTCCCTCTGTGATCGTCAAAGCTCCTC 561
Query 482 TATTTGCACCTTCTTGTACTCCAATTGCAGGGCGATAAGTCTAATAAACCTTCAAGTATC 541
|||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||
Sbjct 562 CATTTGCACCTTCTTGTACTCAAATTGCAGGGCCATAAGCCTCATAAACCTCCAAGTATC 621
Query 542 AACGTGCTGCGTCTACGTGCCTCTTGATCTCGGACCATCGTTCGAAATGGATCTGAACAA 601
|||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 622 AACGTGTTGCGTCTACGTGCCTCTAGACCTCGGACCATCGTTCGAAATGGATTTGAACAA 681
Query 602 ACTCAAGTGCTCGTCGTACTCGGGCTTCTACAACCTCGGTCCAGGCCAAGAATCCCACCC 661
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 682 ACTCAAGTGCTCGTCATACTCCGGCTTCTACAACCTCGGTCCAGGCCAAGAATCCCACCC 741
Query 662 GGAGAATTGGAACTACGGAATCGCACTCAAGTACAAGTTCAACGTTTTCGATGAGTACCC 721
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 742 GGAGAATTGGAACTACGGAATCGCACTCAAGTACAAGTTCAACGTTTTTGATGAGTACCC 801
Query 722 TGGCGTCTGCGGTGGCTGTGAGCGTAGTAACGGTGCTTGTGGCTTTAACACTCAGACAAG 781
||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 802 TGGCGTCTGCGGTAGCTGCGAGCGTAGTAACGGTGCTTGTGGCTTCAACACACAGTCAAG 861
Query 782 CTCGTTCGTTTGTAACTGTCCCGGTGGGATCAACACGACATCGGATTGCTTCTTCCTATA 841
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 862 CTCGTTCGTTTGTAACTGTCCCGGTGGGATTAACACGACATCGGATTGCTTCTTCCTTTA 921
Query 842 CAACTCTGCTTCTATTCTTGTTCCTTGGCTCTCAAGTAAGAGAATGGGTAATGTACCCTT 901
||||||||||||||||||||||||||| ||||||| | || | ||||||||||||||||
Sbjct 922 TAACTCTGCTTCTATTCTTGTTCCTTGGTTCTCAAG-A-GA-A-TGGGTAATGTACCCTT 977
Query 902 TG-CATGGTTTGTTGTTTGGATGGTTATGAGT-CTGCAATAAAGGAG 946
|| |||||||||||||||||||||| ||| || |||| ||||||||
Sbjct 978 TGTCATGGTTTGTTGTTTGGATGGTGATG-GTTCTGCGTTAAAGGAG 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5