BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919817
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1262 0.0
> AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:15405068-15406573 REVERSE LENGTH=1506
Length=1506
Score = 1262 bits (683), Expect = 0.0
Identities = 754/789 (96%), Gaps = 2/789 (0%)
Strand=Plus/Plus
Query 136 AGATTCAAGTTGAGGTTTTGAAACATGGGTTTGATTCTGATGTGTATGTTGGGAATAATT 195
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 401 AGATTCAAGTTGAGGTTTTGAAACATGGGTTTGATTTTGATGTATATGTTGGGAACAATT 460
Query 196 TGATTCATCTATATGGTTCTTGTAAGAAAACTTCTGATGCCAGGAAGGTGTTCGATGAAA 255
|||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 461 TGATCCATCTTTATGGTACTTGTAAGAAAACTTCTGATGCCAGGAAGGTGTTCGACGAAA 520
Query 256 TGACTGACAGAAATTTTGTTTCTTGGAACTCGATTATGACTGCTCTTGTTGAGAATGGTA 315
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TGACTGAGAGAAATGTTGTTTCTTGGAACTCGATTATGACTGCTCTTGTTGAGAATGGTA 580
Query 316 AGTTCAATTTGGTGTTTGAGTGTTTTTGTGAGATGATTGGTAAGAGGTTTTGTCCGGATG 375
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 581 AGTTAAATTTGGTGTTTGAGTGTTTTTGTGAGATGATTGGTAAGCGGTTTTGTCCAGATG 640
Query 376 AGACGACAATGGTTGTTTTGCTCTCTGCGTGTGGTGGTAACTTGAGCTTGGGGAAATTGG 435
||||||||||||| |||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 641 AGACGACAATGGTGGTTTTGCTTTCGGCTTGTGGCGGTAACTTGAGCTTGGGGAAATTGG 700
Query 436 TGCATTCACAGGTGATGGTAAGAGAGTTAGAGTTAAACTGTAGACTAGGTACTGCACTTG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TGCATTCACAGGTGATGGTAAGAGAGTTAGAGTTAAACTGTAGACTAGGTACTGCACTTG 760
Query 496 TAGACATGTATGCAAAATCTGGTGGATTAGAGTATGCTAGGTTAGTTTTCGAAAGAATGG 555
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TAGACATGTATGCAAAATCAGGTGGATTAGAGTATGCTAGGTTAGTTTTCGAAAGAATGG 820
Query 556 TTGACAAAAATGTTTGGACTTGGAGTGCCATGATTGTAGGTTTAGCACAATATGGATTTG 615
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 821 TTGACAAAAATGTTTGGACTTGGAGTGCCATGATTGTAGGATTAGCACAATATGGATTTG 880
Query 616 CAGAAGAAGCCCTTCAACTATTCGCGAAGATGATGAATGAATCAACGGTGAGACCAAACT 675
||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 881 CAGAAGAAGCCCTTCAACTATTCTCGAAGATGATGAAAGAATCATCGGTGAGACCAAACT 940
Query 676 ACGTGACATTTCTCAGTGTTTTATGCGCTTGTAGCCACACATCATTGGTGGATGACGGGT 735
|||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 941 ACGTAACATTTCTCGGTGTTTTATGCGCTTGTAGCCACACGGGATTGGTGGATGACGGGT 1000
Query 736 ACAAATACTTCCAC-AAGATGGAGAAAGCACACAAGATCAAACCAATGATGATTCACTAC 794
||||||| |||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1001 ACAAATATTTCCACGAA-ATGGAGAAAATACACAAGATCAAACCAATGATGATTCACTAC 1059
Query 795 AGAGCAATGGTAGATATCTTGGGACGTGCAGGTCGACTAAACGAGGCGTATGACTTCATA 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 GGAGCAATGGTAGATATCTTGGGACGTGCAGGTCGACTAAACGAGGCGTATGACTTCATA 1119
Query 855 AAGAAAAAGCCTTTTGAGCCTGATGCGGTTGTTTGGAGGACTCTACTCTCCGCTTGTAGT 914
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AAGAAAATGCCTTTTGAGCCTGATGCGGTTGTTTGGAGGACTCTACTCTCCGCTTGTAGT 1179
Query 915 ATCTATCAC 923
||| |||||
Sbjct 1180 ATCCATCAC 1188
Score = 198 bits (107), Expect = 7e-50
Identities = 128/138 (93%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 1 CGACTCCTTCTACTTGGAATATGCTCAGTAGAGGCTATTCTTCGAGTGATACTC-TAGTA 59
||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||
Sbjct 227 CGACTCCTTCTACTTGGAATATGCTCAGTAGAGGCTATTCTTCAAGTGATTCTCCT-GTG 285
Query 60 GAATCGATTTGGTTTTATTCTGAGATGGGGAGACGAGGAATCAAACCTAATAAGCTTACT 119
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 286 GAATCGATTTGGGTTTACTCTGAGATGAAGAGACGAGGAATCAAACCTAATAAGCTCACT 345
Query 120 TTTCCTTTTCTTCTCAAG 137
||||||||||||||||||
Sbjct 346 TTTCCTTTTCTTCTCAAG 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5