BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919825
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10430.1 | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1... 1644 0.0
AT1G59830.1 | Symbols: PP2A-1 | protein phosphatase 2A-2 | chr1... 1085 0.0
> AT1G10430.1 | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1:3428478-3430633
REVERSE LENGTH=1344
Length=1344
Score = 1644 bits (890), Expect = 0.0
Identities = 934/956 (98%), Gaps = 0/956 (0%)
Strand=Plus/Plus
Query 1 GATCGGCGGTGGCTTTTCAAGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GATCGGTGGTGGCTTTTCAAGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAG 235
Query 61 CTGATGGAGTGTAAACCGTTATCAGAGGCGGATGTGAGGACGCTTTGCGATCAAGCGAGA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 CTGATGGAGTGTAAACCGTTATCGGAGGCGGATGTGAGGACGCTTTGCGATCAAGCGAGA 295
Query 121 GCGATCCTTGTCGAGGAATATAATGTTCAGCCGGTGAAGTGCCCTGTTACCGTTTGCGGC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 296 GCGATCCTTGTCGAGGAATATAATGTTCAGCCGGTGAAGTGTCCTGTTACCGTTTGCGGC 355
Query 181 GATATTCACGGCCAGTTTTATGACCTTATTGAGCTCTTTCGAATCGGTGGCAACGCTCCT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 356 GATATTCACGGCCAGTTTTATGACCTTATTGAGCTCTTTCGTATCGGTGGCAACGCTCCT 415
Query 241 GATACTAACTACCTCTTCATGGGAGACTATGTAGACCGTGGATACTATTCAGTAGAGACA 300
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 416 GATACTAACTACCTCTTCATGGGAGACTATGTAGATCGTGGCTACTATTCAGTAGAGACA 475
Query 301 GTTTCTCTATTGGTGGCACTGAAAGTGCGATACAGGGATAGAATTACAATCTTACGAGGG 360
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 476 GTTTCTCTATTGGTGGCACTAAAAGTGCGATACAGGGATAGACTTACAATCTTACGAGGG 535
Query 361 AATCACGAGAGTCGTCAGATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAG 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AATCACGAGAGTCGGCAGATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAG 595
Query 421 TACGGAAATGCAAATGTCTGGAAGTATTTTACAGATCTTTTCGATTATCTTCCTCTTACC 480
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 596 TACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACC 655
Query 481 GCCCTCATAGAGAGTCAGGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCCCTCATAGAGAGTCAGGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACT 715
Query 541 CTTGATAATATCCGAAGCTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTTGATAATATCCGAAGCTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGT 775
Query 601 GATTTATTATGGTCTGATCCCGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCT 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 776 GATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCT 835
Query 661 GGTTATACATTTGGACAGGATATCGCAGCTCAATTTAATCACAACAATGGACTCAGTCTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 836 GGTTATACATTTGGACAGGATATCGCAGCTCAATTTAATCACAACAATGGACTAAGTCTC 895
Query 721 ATTTCAAGAGCGCATCAACTAGTCATGGAAGGTTTCAACTGGTGTCAGGATAAGAATGTG 780
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 896 ATATCAAGAGCGCATCAACTTGTCATGGAAGGTTTTAACTGGTGTCAGGATAAGAATGTG 955
Query 781 GTGACTGTGTTTAGTGCACCAAACTATTGCTACCGATGTGGAAACATGGCAGCGATTCTA 840
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 956 GTGACTGTGTTTAGTGCACCAAACTATTGCTACCGGTGTGGAAACATGGCTGCCATTCTA 1015
Query 841 GAGATAGGAGAGAACATGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAGATAGGAGAGAACATGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTT 1075
Query 901 GAACCTGATACTACCCGTAAGACCCCTGATTATTTTTTGTGATTTCTCTGTTTTTT 956
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAACCTGATACTACTCGGAAGACCCCTGATTATTTTTTGTGATTTCTCTGTTTTTT 1131
> AT1G59830.1 | Symbols: PP2A-1 | protein phosphatase 2A-2 | chr1:22020519-22022484
REVERSE LENGTH=1301
Length=1301
Score = 1085 bits (587), Expect = 0.0
Identities = 827/944 (88%), Gaps = 11/944 (1%)
Strand=Plus/Plus
Query 20 AGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAGCTGATGGAGTGTAAACCGT 79
||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 190 AGATGCCGTTAAACGGAGATCTCGACCGTCAGATCGAACAGCTAATGGAGTGTAAGCCGT 249
Query 80 TATCAGAGGCGGATGTGAGGA-CGCTTTGCGATCAAGCGAGAGCGATCCTTGTCGAGGAA 138
|| || || || |||| || | |||||||||||||| | |||||| ||||| ||||||
Sbjct 250 TAGGTGAAGCAGACGTGAAGATC-CTTTGCGATCAAGCTAAAGCGATTCTTGTTGAGGAA 308
Query 139 TATAATGTTCAGCCGGTGAAGTGCCCTGTTACCGTTTGCGGCGATATTCACGGCCAGTTT 198
||||||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||||
Sbjct 309 TATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGCCAGTTT 368
Query 199 TATGACCTTATTGAGCTCTTTCGAATCGGTGGCAACGCTCCTGATACTAACTACCTCTTC 258
|||||||| |||||||| ||||| || ||||| || |||||||||||||| |||||||||
Sbjct 369 TATGACCTAATTGAGCTATTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTCTTC 428
Query 259 ATGGGAGACTATGTAGACCGTGGATACTATTCAGTAGAGACAGTTTCTCTATTGGTGGCA 318
|||||||| |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 429 ATGGGAGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTCTATTGGTGGCA 488
Query 319 CTGAAA-GTGCGATACAGGGATAGAATTACAATCTTACGAGGGAATCACGAGAGTCGTCA 377
| ||| ||||| |||||||| ||| |||| ||| | ||||||||||| ||||| |||||
Sbjct 489 -TTAAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGCCGTCA 547
Query 378 GATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAGTACGGAAATGCAAATGT 437
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 548 GATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAATGT 607
Query 438 CTGGAAGTATTTTACAGATCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCA 497
|||||||||||||| || |||||||||||||| |||||||| || ||||||||||||||
Sbjct 608 GTGGAAGTATTTTACGGACCTTTTCGATTATCTCCCTCTTACAGCACTCATAGAGAGTCA 667
Query 498 GGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAG 557
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 668 GGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACTCTTGACAATATCCGAAG 727
Query 558 CTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGA 617
||||||||| ||||| |||||||||||||||||||| ||||| ||| || | ||||||||
Sbjct 728 CTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCTGA 787
Query 618 TCCCGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGACA 677
|||||| ||||| |||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct 788 TCCCGACGATCGTTGTGGATGGGGAATATCTCCTCGTGGTGCTGGTTACACGTTTGGACA 847
Query 678 GGATATCGC-AGCTCAATTTAATCACAACAATGGACTCAGTCTCATTTCAAGAGCGCATC 736
||| || || | |||| |||||||| ||||||||||| ||||| || |||||||||||||
Sbjct 848 GGACATTGCTA-CTCAGTTTAATCATAACAATGGACTGAGTCTGATCTCAAGAGCGCATC 906
Query 737 AACTAGTCATGGAAGGTT-TCAACTGGTGTCAGGATAAGAATGTGGTGACTGTGTTTAGT 795
|||| || |||||||| | | || ||||||||||| ||||| || ||||| |||||||||
Sbjct 907 AACTTGTAATGGAAGGCTAT-AATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGT 965
Query 796 GCACCAAACTATTGCTACCGATGTGGAAACATGGCAGCGATTCTAGAGATAGGAGAGAAC 855
||||| ||||| || ||| |||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 966 GCACCGAACTACTGTTACAGATGTGGAAACATGGCCGCAATTCTTGAGATTGGAGAAAAG 1025
Query 856 ATGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTTGAACCTGATACTACC 915
||||| || |||||||| || ||||||||||| ||| ||||||| ||||| ||||| ||
Sbjct 1026 ATGGAACAGAACTTCCTTCAATTCGATCCAGCACCTAGACAAGTCGAACCCGATACCACG 1085
Query 916 CGTAAGACCCCTGATTATTTTTTGTGATTTC-TCTGTTTTTTCT 958
|| |||||||||||||||||||||||||||| | | ||||||||
Sbjct 1086 CGCAAGACCCCTGATTATTTTTTGTGATTTCAT-T-TTTTTTCT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5