BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919827

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10455.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   521    2e-147


> AT1G10455.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G51970.1); 
Has 75 Blast hits to 73 proteins in 5 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3438555-3439013 
FORWARD LENGTH=459
Length=459

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 406/463 (88%), Gaps = 19/463 (4%)
 Strand=Plus/Plus

Query  21   ATGGCA-AAGAATAACG-ATATCAATCTGGATTTGAGTCTAAGCCAATATGTAGAAGATG  78
            |||||| || ||||| | || |||||||||| ||||||||||||||||||||||||||||
Sbjct  1    ATGGCACAA-AATAA-GAATCTCAATCTGGAATTGAGTCTAAGCCAATATGTAGAAGATG  58

Query  79   ATCCTTGGGTTCTAACGAAGAAGCTAAGTGACTCTGATCTTTGCTACAGGGCTCAGCTCT  138
            ||||||||||| ||| |||||||||||||||||||||||||| ||| || ||||| ||||
Sbjct  59   ATCCTTGGGTTTTAAAGAAGAAGCTAAGTGACTCTGATCTTTACTATAGCGCTCAACTCT  118

Query  139  ATTTACCAAAACAAGAGATGGAACAATTTATACTTCCGGAGATGGAAAATGATCTTGTCC  198
            ||||||| ||||||||||||||||| ||| ||||||||||||||||  |||| |||||||
Sbjct  119  ATTTACCGAAACAAGAGATGGAACACTTTGTACTTCCGGAGATGGATCATGACCTTGTCC  178

Query  199  GGAAATTGGGAGCTGGCGTTGAGATCAAACTCAGAGATATTGACAATGTTAGCGACGATT  258
            | ||||||||||||||||||||| ||||| |||||||| |||||| |||| |  ||||||
Sbjct  179  GAAAATTGGGAGCTGGCGTTGAGGTCAAAGTCAGAGATGTTGACAGTGTT-G--ACGATT  235

Query  259  CTTACACCGTAAGACTTAAAGTACGCAACGGCCAGTATTATCTCGAAAAAGGATGGCGCC  318
             |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct  236  TTTACACAGTAAGACTTAAAGTACGCAACGGCCAGTATTATCTCGGAAAAGGATGGGGCC  295

Query  319  TCATAAAAAATGATAAGTGTTTAAAA-ACAGGAGATCATATTGGACTCTTTTGGGATAAG  377
            |||| |||||||  ||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct  296  TCATCAAAAATGCCAAG-GTTTTAAACACAGGAGATCATATTGGACTCTTTTGGGATAAG  354

Query  378  TTGACAGGAGAATTCAAGTTCAAGCATTCCGAATC--A--CAAT--C----CATCGTGAA  427
            |||||| ||||| ||||||||||||||| | ||||  |  ||||  |    ||||| |||
Sbjct  355  TTGACAAGAGAAGTCAAGTTCAAGCATTTCAAATCTCAATCAATAACAATGCATCGCGAA  414

Query  428  GCGGGTACTAATTCGACACAGAAGAACAAATTAAAGGAGAAAT  470
            |||||||||| |||||||||||| |||  |||| || ||||||
Sbjct  415  GCGGGTACTACTTCGACACAGAAAAACGTATTACAGAAGAAAT  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5