BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919828
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10460.1 | Symbols: GLP7 | germin-like protein 7 | chr1:3439... 979 0.0
> AT1G10460.1 | Symbols: GLP7 | germin-like protein 7 | chr1:3439322-3440320
REVERSE LENGTH=999
Length=999
Score = 979 bits (530), Expect = 0.0
Identities = 616/658 (94%), Gaps = 4/658 (1%)
Strand=Plus/Plus
Query 4 TAACGTTCACACTTCTGATGGGTCGGGTTAAATCCGACCCGGACCCGCTCCAAGACTACT 63
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 TAACGCTCACACTTCTTATGGGTCGGGTTAAATCCGACCCGGACCCGCTCCAAGACTACT 168
Query 64 GTGTTTCTCCTTCTCCTTCATCACACCAACAAATCTTCCTCAACGGCGTACTTTGCAAAG 123
| ||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 169 GCGTTTCTCCTCCTCCTTCATCTCACCAACAAATCTTCCTCAACGGCAAACTTTGCAAAG 228
Query 124 ATCCGAAAGAAGCCACCGTCTCCGACTTTACAACCTCCGCATTGTCCAGACCCGGAAACA 183
|||||| | |||||| |||||| |||||| |||| |||||||| ||||||||||||||||
Sbjct 229 ATCCGACACAAGCCAGCGTCTCTGACTTTTCAACATCCGCATTATCCAGACCCGGAAACA 288
Query 184 CTCAGACCAAACCGTTAATGACCAACGTCACTGTCACCACAACCGCCAACCTCCGAGGTC 243
|| ||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 289 CTAAGACCAAACCGTTTATGATCAACGTCACTGTGACCACAACCGCCAACCTCCCAGGTC 348
Query 244 TCAACACAATGGGCCTCACAATGGCCAGGCTTGACTTCGGAGGCTCTGGTGTTGTCCCAC 303
| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 349 TAAACACAGTGGGCCTTACAATGGCCAGGCTAGACTTCGGAGGCTCTGGTGTTGTCCCAC 408
Query 304 CGCACGTGCACCCACGCGCCTCCGAAGTAACTGTCTGCCTCGACGGTGTCCTTCTCGTCG 363
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 409 CGCACGTGCACCCACGCGCCTCCGAAGTGACAGTCTGCCTCGACGGTGTCCTTCTCGTCG 468
Query 364 GGTTCGTGGATACGTCGGGTCGGGTCTTTACCCAGGAGCTTCATCCGGGTGAGACATTCG 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 469 GGTTCGTGGATACGTCGGGTCGGGTCTTTACGCAGGAGCTTCATCCGGGTGAGACATTCG 528
Query 424 TGTTTCCCAAAGGGTTGATTCATTTTCTATATAATATTGATACGGTGAGCTCAGCTTTGG 483
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 529 TGTTTCCCAAAGGTTTGATCCATTTTCTATATAACATTGATACGGTGAGCTCAGCTTTGG 588
Query 484 CAGTCTCTGGGCTGAATAGTCAGAATCCTGGGACTCAGATTGTGTCTTTGTCGTCTTTCA 543
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 589 CAGTCTCTGGGCTGAGTAGTCAGAATCCTGGGACTCAGATTGTATCTTTGTCGTCTTTCA 648
Query 544 TTCCAAAGCCTCCGTTTCTGCAAGAGGTTTTGAAGAGCGCTTTTGATATCAACGGCCAGG 603
|| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 649 TTTCAAAGCCTCCGTTTCTGGTAGAGGTTTTGAAGAGTGCTTATGATATCAACGGCCAGG 708
Query 604 ATGTTGCTAGGATCCGCAAAAGTCTTCAACGCTAAAA-TGCTAAAA-CCAGTAAAACT 659
|||||||||||||||||||||||||| || ||||||| |||||||| || |||||||
Sbjct 709 ATGTTGCTAGGATCCGCAAAAGTCTTGAAGGCTAAAAATGCTAAAAGCC--TAAAACT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31848449198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5