BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919829
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | response regul... 1225 0.0
AT1G59940.1 | Symbols: ARR3 | response regulator 3 | chr1:22065... 436 1e-121
> AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | response regulator
4 | chr1:3442327-3443957 REVERSE LENGTH=1275
Length=1275
Score = 1225 bits (663), Expect = 0.0
Identities = 778/831 (94%), Gaps = 17/831 (2%)
Strand=Plus/Plus
Query 1 ACACTTACTACAAACTCGTCTATGGCCAGAGACGGTGGTGTTTCTTGTTTACGGAGGTCG 60
||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 ACAGTTACTATAAGCTCGTCTATGGCCAGAGACGGTGGTGTTTCTTGTTTACGAAGGTCG 237
Query 61 GAGATGATGA---AC----G--TCGGAGGAATTGAATCTGCGCCGTTGGATTTAGATGAA 111
|||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGATGATGAGCGTCGGTGGTATCGGAGGAATTGAATCTGCGCCGTTGGATTTAGATGAA 297
Query 112 GTTCATGTCTTGGCCGTCGACGACAGCCTCGTTGATCGGATTGTTATCGAGAGATTGCTT 171
||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||||||||||
Sbjct 298 GTTCATGTCTTAGCCGTTGATGACAGTCTCGTTGATCGTATTGTCATCGAGAGATTGCTT 357
Query 172 CGTATTACTTCCTGCAAAGTTACGGCGGTAGATAGTGGATGGCGTGCTCTGGAATTTCTA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGTATTACTTCCTGCAAAGTTACGGCGGTAGATAGTGGATGGCGTGCTCTGGAATTTCTA 417
Query 232 GGGTTAGATAATGAGAAAGCTTCTGCTGAATTCGATAGTTTGAAAGTTGATTTGATCATC 291
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 GGGTTAGATAATGAGAAAGCTTCTGCTGAATTCGATAGATTGAAAGTTGATTTGATCATC 477
Query 292 ACTGATTACTGTATGCCTGGAATGACTGGTTATGAGCTTCTCAAGAAGATTAAGGAATCG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTGATTACTGTATGCCTGGAATGACTGGTTATGAGCTTCTCAAGAAGATTAAGGAATCG 537
Query 352 TCTAATTTCAGAGAAGTTCCGGTTGTAATCATGTCATCGGAGAACGTATTGACCAGAATC 411
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 538 TCCAATTTCAGAGAAGTTCCGGTTGTAATCATGTCGTCGGAGAATGTATTGACCAGAATC 597
Query 412 GATAGATGCCTTGAGGAAGGTGCTCAAGATTTCTTATTGAAACCGGTGAAACTCGCCGAC 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GACAGATGCCTTGAGGAAGGTGCTCAAGATTTCTTATTGAAACCGGTGAAACTCGCCGAC 657
Query 472 GTTAAACGTCTGAGAAATCACTTAACTAAAGACGTTAAACTTTCCAACGGAAACAAACGG 531
|| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTGAAACGTCTGAGAAGTCATTTAACTAAAGACGTTAAACTTTCCAACGGAAACAAACGG 717
Query 532 AAGCTTCCGGATGATTCT-GATTCCGTTATCTCTTCGCTTCCTCCGCCGTCATCTCCGTT 590
||||||||||| |||||| | |||||||| ||||||||||||||| |||||| |||||||
Sbjct 718 AAGCTTCCGGAAGATTCTAG-TTCCGTTAACTCTTCGCTTCCTCCACCGTCACCTCCGTT 776
Query 591 GACTATCTCGCCTGAATCGTCGCCGCCGTTGACTATTTCGACTGAGTCGTCGGACTCTTC 650
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||
Sbjct 777 GACTATCTCGCCTGAATCGTCGCCGCCGTTGACTGTTTCGACTGAATCGTCGGATTCGTC 836
Query 651 TCCGCAGTTATCTCCGGTGGAGATGTTTTCCACCTCGCCACTTTCATCTCCAATAGACGA 710
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 837 TCCGCCGTTATCTCCGGTGGAGATCTTTTCCACCTCGCCACTTTCATCTCCGATAGACGA 896
Query 711 TGACGATGTTTTGACGACGTCGCCGGAATCGTCGCCGGAGGAATCGCCGATTCGACGGCA 770
||| |||| | |||| || | || |||||| |||||||||||||||||||||||||
Sbjct 897 TGAAGATGAT--GACGT-GTTGACG---TCGTCGTCGGAGGAATCGCCGATTCGACGGCA 950
Query 771 GAAGATGAGGAGTCCCGGATTAGATTAGTGGAACTATTCTGGGATGCCGTG 821
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GAAGATGAGGAGTCCCGGATTAGATTAGTGGAACTATTCTGGGATGCCGTG 1001
> AT1G59940.1 | Symbols: ARR3 | response regulator 3 | chr1:22065617-22066973
REVERSE LENGTH=1051
Length=1051
Score = 436 bits (236), Expect = 1e-121
Identities = 439/534 (82%), Gaps = 25/534 (5%)
Strand=Plus/Plus
Query 20 CTATGGCCAGAGACGGTGGTGTTTCTTGTTTACGGAGGTCGGAGATGAT--G-A-ACG-- 73
||||||||| ||||||||| ||||||||| |||| |||||||||||||| | | | |
Sbjct 77 CTATGGCCAAAGACGGTGGCGTTTCTTGTCTACGAAGGTCGGAGATGATCGGTATAGGAA 136
Query 74 TCGGAGGAA-TTGAATCTGCGCCGTTGGATT-TAGATGAAGTTCATG-TCTTGGCCGTCG 130
||||| ||| |||||||| ||||| | |||| | ||| |||| || | || | ||||| |
Sbjct 137 TCGGA-GAACTTGAATCTCCGCCGCTAGATTCT-GATCAAGTCCACGTTC-TCGCCGTTG 193
Query 131 ACGACAGCCTCGTTGATCGGATTGTTATCGAGAGATTGCTTCGTATTACTTCCTGCAAAG 190
| |||||||| |||||||| || || ||||| ||||||||||| || || ||||||||||
Sbjct 194 ATGACAGCCTAGTTGATCGAATAGTCATCGAAAGATTGCTTCGAATCACATCCTGCAAAG 253
Query 191 TTACGGCGGTAGATAGTGGATGGCGTGCTCTGGAATTTC-TAGGGTTAGATAATGAGAAA 249
| |||||||| ||||| |||||||||||||| ||| ||| |||| ||||| | || |||
Sbjct 254 TCACGGCGGTTGATAGCGGATGGCGTGCTCTCGAA-TTCTTAGGATTAGACGACGACAAA 312
Query 250 GCTTCTGCT-GAATTCGATAGTTTGAAAGTTGATTTGATCATCACTGATTACTGTATGCC 308
|| | | | ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 313 GCCGCCG-TCGAATTCGATAGATTGAAGGTGGATTTGATCATCACTGATTACTGTATGCC 371
Query 309 TGGAATGACTGGTTATGAGCTTCTCAAGAAGATTAAGGAATCGTCTAA-TTTCAGAG-AA 366
|||||||||||| || |||||||| || ||||||||||||||| | || ||| | || ||
Sbjct 372 TGGAATGACTGGATACGAGCTTCTGAAAAAGATTAAGGAATCGAC-AAGTTTTA-AGGAA 429
Query 367 GTTCCGGTTGTAATCATGTCATCGGAGAACGTATTGAC-CAGAATCGATAGATGCCTTGA 425
||||| |||||||| ||||| |||||||| ||| |||| | | ||||| ||||| |||||
Sbjct 430 GTTCCTGTTGTAATTATGTCGTCGGAGAATGTAATGACTC-GTATCGACAGATGTCTTGA 488
Query 426 GGAAGGTGCTCAAGATTTCTTATTGAAACCGGTGAAACTCGCCGACGTTAAACGTCTGAG 485
|||||||| | ||||| ||| | ||||||||||||||||||||||| |||||||||||
Sbjct 489 AGAAGGTGCGGAGGATTTTTTACTAAAACCGGTGAAACTCGCCGACGTGAAACGTCTGAG 548
Query 486 AAATCACTTAACTAAAGACGTTAAACTTTCCAACG--G-AAACAAACGGAAGCT 536
| | |||| || | |||||||||| | || || | |||||||||||||||
Sbjct 549 GAGTTACTTGACGAGAGACGTTAAAGTCGCCGCCGAAGGAAACAAACGGAAGCT 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5