BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919838

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10538.1 | Symbols:  | pseudogene of CPL4 (phosphoprotein ph...   215    2e-55


> AT1G10538.1 | Symbols:  | pseudogene of CPL4 (phosphoprotein 
phosphatase) | chr1:3474515-3474765 FORWARD LENGTH=251
Length=251

 Score =  215 bits (116),  Expect = 2e-55
 Identities = 160/179 (89%), Gaps = 11/179 (6%)
 Strand=Plus/Plus

Query  11   GATAGACGTTATGCTAGAGAGATGGCTAAAGTTGTTAGATCCTAAAGGAAAGTATTTCAG  70
            |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  74   GATAGATGTTACGCTAGAGAGATGGCT-AAGTTGTTAGATCCTAAAGGAAAGTATTTCAG  132

Query  71   CGATCGGATTATTTCTCGTGATGATGGTACGGTGAGACATAAGAAGAGTCTTGATGT---  127
            |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||   
Sbjct  133  CGATCGAATTATTTCTCGTGATGATCGTACGGTGAGACATAAGAAGAATCTTGATGTTTT  192

Query  128  -GATGGGAAACGAAGAAGC------TGTTCTTTTTGTCGATGAATCGAAGATTGTTTGG  179
             ||||||||||||||||||      ||||||| |||||||||| ||||||| |||||||
Sbjct  193  TGATGGGAAACGAAGAAGCAGAAGCTGTTCTTATTGTCGATGACTCGAAGAATGTTTGG  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5