BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919845

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39540.1 | Symbols:  | Gibberellin-regulated family protein ...   200    4e-51


> AT2G39540.1 | Symbols:  | Gibberellin-regulated family protein 
| chr2:16500866-16501241 FORWARD LENGTH=264
Length=264

 Score =  200 bits (108),  Expect = 4e-51
 Identities = 154/176 (88%), Gaps = 4/176 (2%)
 Strand=Plus/Minus

Query  25   TCAAGGACACTTGGATCCCCGCCTTTGGAGTTTTTCCTATCGCGGTAACAAAGACATTCA  84
            ||||||||||||||||  || ||||||||||||||| |||| ||||| ||| ||||||||
Sbjct  264  TCAAGGACACTTGGAT--CCACCTTTGGAGTTTTTCATATCACGGTAGCAAGGACATTCA  207

Query  85   TCTTTGTTTCCGTATG-TGCCTCAGAGAACACAATTACTCTTCTCGCAACATATGTTGCA  143
            ||||||| |||  | | | ||  || |||||||||||| ||||| ||||||||| |||||
Sbjct  206  TCTTTGTGTCCAAAAGTTCCCGAAG-GAACACAATTACACTTCTGGCAACATATATTGCA  148

Query  144  GTGCTTGAGGCACTCTTCATGTTGTCCTGCCTTTGAGCATCTCACATTTCACTTTC  199
            || ||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  147  GTACTTGAGGCATTCTTCATGTTGTCCTGCCTTTGAGCATCTCACATTGCACTTTC  92



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8853037776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5