BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919849
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3... 1168 0.0
> AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3
domain of STAM 2 | chr1:3503724-3505502 FORWARD LENGTH=1025
Length=1025
Score = 1168 bits (632), Expect = 0.0
Identities = 679/702 (97%), Gaps = 2/702 (0%)
Strand=Plus/Plus
Query 1 GAGCCGATGTTTCTGCTTCCATGGTAACGCTCTCGTCTCCATCTCCGTCGCTCTCTTGCG 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 22 GAGCCGATGTTTCTGCTTCCATGGTAACGCTCTCGTCTCCATCTCCCTCGCTCTCTTGCG 81
Query 61 TAGAGAACGTGACATGTAAATCTTCTCACGTTTCTCGGGTTATAATCTCCGGTCCCGATA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 82 TAGAGAACGTGACATGTAAATCTTCTCACGTTTCTCGGGTTCTAATCTCCGGTACCGATA 141
Query 121 AGAATAATCACGGTGAATCATCGG-AGCCCAAGATACTGAGAGATGTTCATATCTCAGAA 179
| | ||||||||||||||| |||| || |||| |||||||||||||||||||||||||||
Sbjct 142 ATATTAATCACGGTGAATCGTCGGAAG-CCAAAATACTGAGAGATGTTCATATCTCAGAA 200
Query 180 AGGTTGTTGGAGGATTTCACTGAGCTTGCAAGAGAGAACACTGAGAAGGACCTCGAGACT 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGGTTATTGGAGGATTTCACTGAGCTTGCAAGAGAGAACACTGAGAAGGACCTCGAGACT 260
Query 240 TGTGGGACTCTCGCTGCTTTTCTTGAAAGAGGAGTTTTTTATGTAACCACTCTGATAATA 299
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 261 TGTGGGACTCTCGCTGCCTTTCTTGAAAGAGGAATTTTTTATGTAACCACTCTGATAATA 320
Query 300 CCTAAGCAAGAATCTACTTCCAATTCTTGTCAGGCTATGAATGAAGTGGAAGTGTTTTCC 359
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 CCTAAGCAAGAATCAACTTCTAATTCTTGTCAGGCTATGAATGAAGTGGAAGTGTTTTCC 380
Query 360 ATTCAAAATGAAAGAGAACTCTATCCCGTAGGATGGATTCATACTCATCCTTCTCAGGGT 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 ATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCATACTCATCCTTCTCAGGGT 440
Query 420 TGTTTCATGTCATCTGTAGATTTGCATACACATTACTCGTATCAGGTAATGGTGCCAGAG 479
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 441 TGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGGTAATGGTGCCAGAG 500
Query 480 GCTTTTGCAATAGTCGTAGCTCCAACCGATAGCTCTAAGAGTTACGGGATATTTAAGCTA 539
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 501 GCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCTAAGAGTTACGGGATATTTAAGCTA 560
Query 540 ACGGACCCTGGAGGAATGGAGGTACTGAGAGGCTGCTCAGAGACTGGATTCCACCCACAC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 561 ACGGACCCTGGAGGAATGGAGGTACTGAGAGGCTGCTCAGAGACTGGATTCCACCCGCAC 620
Query 600 AAAGAACCAGAAGATGGGAACCCGGTTTATGAGCATTGCTTAAACGTCTACAAGAACTCC 659
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 621 AAAGAACCAGAAGATGGGAACCCAGTTTATGAGCATTGCTCAAACGTCTACAAGAACTCG 680
Query 660 AACCTTAGGTTCGAGATTTTTGATCTACGTTAAGGTAACGAC 701
||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AACCTTAGGTTCGAGATTTTTGATCTACGTTAAGGTAACGAC 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5