BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919851
Length=2200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10620.1 | Symbols: | Protein kinase superfamily protein | ... 3435 0.0
AT1G49270.1 | Symbols: | Protein kinase superfamily protein | ... 191 3e-47
> AT1G10620.1 | Symbols: | Protein kinase superfamily protein
| chr1:3509001-3511975 REVERSE LENGTH=2157
Length=2157
Score = 3435 bits (1860), Expect = 0.0
Identities = 2069/2167 (95%), Gaps = 25/2167 (1%)
Strand=Plus/Plus
Query 21 ATGGACAAAGTCCAGCAACAAGCAGATTTAATCGGTAAGACGATATCTCCGTTTGTAGCT 80
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGACAAAGTCCAGCAACAAGCAGATTTATTCGGTAAGACGATATCTCCGTTTGTAGCT 60
Query 81 TCACAACCAACAAATGTCGGAGGATTAACTGATCAGAAAATCATCGGCGGTTCTGAGACG 140
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 TCACAACCAACAAATGTCGGAGGATTCACTGATCAGAAAATCATTGGCGGTTCTGAGACG 120
Query 141 ACACAACCTCCAGCCACCTCACCTCCTTCTCCTCCATCCCCCGACAGTGGCGGCGCACAA 200
||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 121 ACACAACCTCCAGCCACCTCACCTCCTTCTCCTCCATCCCCTGACA---------CACAA 171
Query 201 GCATCTCCCCCGCCGGCAACAGCTGCTCAACCACCACCGAATCAGCCTCCTAATACAAct 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ACATCTCCCCCGCCGGCAACAGCTGCTCAACCACCACCGAATCAGCCTCCTAATACAACT 231
Query 261 ccacctccaacacctccttcttcccctccaccttctataactccacctccttcacctcct 320
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CCACCTCCAACGCCTCCTTCTTCCCCTCCACCTTCTATAACTCCACCTCCTTCACCTCCT 291
Query 321 cagcctcaacctccGCCTCAATCCACCCCAACTGGAGATTCTCCGGTGGTGGTTCCTTTT 380
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 292 CAGCCTCAACCTCCGCCTCAATCCACCCCAACTGGAGATTCTCCGGTGGTGATTCCTTTT 351
Query 381 CCAAAGCCTCAATTACCTCCTCCTTCGCTTCTTCCTCCTCCCTCCTTAGTTAATCAGCTA 440
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 352 CCAAAGCCTCAATTACCTCCTCCTTCTCTTTTTCCTCCCCCCTCCTTAGTTAATCAGCTA 411
Query 441 CCGGATCCAAGAACC-AATGATGATAACATACTTCAACCCATCAACAACCCTATTTCTCC 499
||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 412 CCGGATCCAAG-ACCTAATGATAATAACATACTTGAACCCATCAACAACCCTATTTCTCT 470
Query 500 TCCGTCTCCGCCTTCTACTCCCTTTTCGCCACCGTCTAC-GGAAAATTCCGGCAGTCAAG 558
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 471 TCCGTCTCCGCCTTCTACTCCCTTTTCGCCACCGTCT-CAGGAAAATTCCGGCAGTCAAG 529
Query 559 GGTCTCCTCCGTTGTCATCTTTATTGCCTCCGTTGCTTCCCCTAAGCCCTAATTCTCCTG 618
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 530 GGTCTCCTCCGTTGTCATCTTTATTGCCTCCGATGCTTCCGCTAAACCCTAATTCTCCTG 589
Query 619 GAAACCCTTCACAACCCTTGGACTCACCCCCGGGAGGAGGATCAAATCGTGTACCCTCGT 678
||||||||| ||| |||||||| ||||| | |||||||| ||||||||||||||||||||
Sbjct 590 GAAACCCTTTACAGCCCTTGGATTCACCTCTGGGAGGAGAATCAAATCGTGTACCCTCGT 649
Query 679 CGTCTTCTTCCCCGTCTCCTCCTTCCCTCTCCGGCTCCAATAACCATTCCGGAGGCTCTA 738
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 650 CGTCTTCTTCCCCATCTCCTCCTTCCCTCTCCGGATCAAATAACCATTCCGGAGGCTCTA 709
Query 739 ATAGACATAATGCCAATAATAACGGAAATGATGGCAATGGCCAACAAAGTAATGAGTCTA 798
|||||||||||||||||| |||||| ||| ||| | | |||||||||||||||||||||
Sbjct 710 ATAGACATAATGCCAATAGTAACGGGGATGGTGGTACTAGCCAACAAAGTAATGAGTCTA 769
Query 799 ATTACACCGAGAAGACAATGATTGGTATTGGGATCGCAGGTGTGTTGGCTGTA-ATT-TT 856
||||||||||||||||| |||||||||||||||||||||||||||||| | | ||| ||
Sbjct 770 ATTACACCGAGAAGACAGTGATTGGTATTGGGATCGCAGGTGTGTTGG-T-CATATTGTT 827
Query 857 CATCGCTGCCGTTTTCTTCGTTAGGAGGAAACAAAAGAAAGGTTCTTCTTCTCCGCGCTC 916
|||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 828 CATCGCTGGCGTTTTCTTTGTTAGGAGGAAACAAAAGAAAGGCTCTTCTTCCCCGCGCTC 887
Query 917 TAACCAGTATTTGCCACCGGCTAATGTCTCTGTAAATACAGAGGGATTCATCCATTACAG 976
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 888 TAACCAGTATTTGCCACCGGCTAATGTCTCTGTAAATACAGAAGGATTCATCCATTACAG 947
Query 977 ACAGAAACCCGGAAATGGGAACAGCTCGGCGCAGAACTCTTCACCGGATACTAACAGTCT 1036
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ACAGAAACCCGGGAATGGGAACAGCTCGGCGCAGAACTCTTCACCGGATACTAACAGTCT 1007
Query 1037 TGGGAACCCAAAACATGGTAGAGGAACCCCTGACTCCGCAGTAATAGGGACTTCAAAGAT 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TGGGAACCCAAAACATGGTAGAGGAACCCCTGACTCCGCAGTAATAGGGACTTCAAAGAT 1067
Query 1097 CCTTTTCACCTACGAAGAGCTAAGCCAGATAACGGAAGGATTTTGCAAAAGCTTTGTGGT 1156
|| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1068 CCATTTCACCTACGAAGAGCTAAGTCAGATAACTGAAGGATTTTGCAAGAGCTTTGTGGT 1127
Query 1157 AGGAGAAGGCGGGTTCGGGTGTGTTTACAAGGGCATCCTTTTCGAGGGAAAGCCAGTAGC 1216
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1128 AGGAGAAGGCGGGTTCGGGTGTGTCTACAAGGGCATCCTATTCGAGGGAAAGCCAGTAGC 1187
Query 1217 GATCAAGCAGCTAAAGTCGGTCAGCGCAGAAGGATATAGAGAGTTCAAAGCTGAAGTAGA 1276
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GATCAAACAGCTGAAGTCGGTCAGCGCAGAAGGATATAGAGAGTTCAAAGCTGAAGTAGA 1247
Query 1277 GATCATAAGCAGAGTGCATCATAGGCACTTGGTGTCTCTTGTGGGTTATTGCATCTCTGA 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GATCATAAGCAGAGTGCATCATAGGCACTTGGTGTCTCTTGTGGGTTATTGCATCTCTGA 1307
Query 1337 ACAACACAGATTTCTCATCTATGAGTTTGTCCCCAACAATACTTTGGATTACCATTTGCA 1396
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1308 ACAACACAGATTCCTCATCTATGAGTTTGTCCCCAACAATACTTTGGATTACCATTTACA 1367
Query 1397 TGGCAAAAACTTACCGGTTTTGGAATGGACTAGAAGAGTCAGGATTGCAATAGGCGCAGC 1456
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1368 TGGCAAAAACTTACCGGTTTTGGAATGGAGTAGAAGAGTCAGGATTGCAATAGGCGCAGC 1427
Query 1457 CAAAGGACTTGCTTATCTACATGAAGATTGTCATCCGAAGATTATCCATAGGGACATCAA 1516
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1428 CAAAGGACTTGCTTATCTACATGAAGATTGCCACCCAAAGATTATCCATAGGGACATCAA 1487
Query 1517 ATCGTCAAATATTCTGTTGGATGATGAATTCGAAGCTCAGGTTGCAGATTTTGGACTCGC 1576
||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1488 ATCGTCAAACATTCTGCTGGATGATGAATTCGAAGCTCAGGTTGCAGATTTCGGACTCGC 1547
Query 1577 AAGACTGAACGATACTGCACAGTCACACATATCAACGCGTGTCATGGGCACATTTGGGTA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1548 TAGACTGAACGATACTGCACAGTCACACATATCAACGCGTGTCATGGGCACATTCGGGTA 1607
Query 1637 TTTAGCACCAGAATATGCGTCAAGCGGAAAGCTAACGGATAGATCAGATGTGTTTTCATT 1696
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TCTAGCACCAGAATATGCGTCAAGCGGAAAGCTAACGGATAGATCAGATGTGTTTTCATT 1667
Query 1697 TGGAGTTGTGCTTCTCGAACTCATCACTGGTCGCAAACCTGTTGATACCTCTCAACCTTT 1756
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1668 TGGAGTTGTGCTTCTCGAACTCATCACCGGTCGCAAACCTGTTGATACCTCTCAACCTTT 1727
Query 1757 GGGTGAAGAAAGTCTCGTCGAATGGGCACGTCCACGGCTAATCGAGGCCATTGAAAAAGG 1816
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1728 GGGTGAAGAAAGTCTCGTCGAATGGGCACGTCCAAGGCTAATCGAGGCCATTGAAAAAGG 1787
Query 1817 TGACATCAGCGAAGTAGTGGATCCACGGCTAGAAAATGATTACGTCGAAGGTGAAGTCTA 1876
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1788 TGACATCAGCGAAGTAGTGGATCCACGGCTAGAGAATGATTACGTCGAAAGTGAAGTCTA 1847
Query 1877 TAGAATGATCGAAACGGCAGCGTCTTGTGTTAGACATTCAGCTCTTAAA-CGACCTCGTA 1935
|| |||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1848 TAAAATGATTGAAACGGCAGCGTCTTGTGTTAGACATTCCGCT-TTAAAACGACCTCGTA 1906
Query 1936 TGGTTCAGGTTGTAAGAGCTCTGGACACGAGAGATGACTTGTCGGATCTGACAAACGGAG 1995
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TGGTTCAGGTTGTTAGAGCTCTGGACACGAGAGATGACTTGTCGGATCTGACAAACGGAG 1966
Query 1996 TTAAAGTGGGTCAAAGTACGGTCTACGACTCGGGTCAATACAGTAATGAGATTCGAATTT 2055
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1967 TTAAAGTGGGTCAAAGTAGGGTCTACGACTCCGGTCAATACAGTAATGAGATTCGAATTT 2026
Query 2056 TCAGACGAGCCTCTGAAGATTCCTCGGATCTTGGTACTAATACTGGCTACTACCCAAGCC 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2027 TCAGACGAGCCTCTGAAGATTCCTCGGATCTTGGTACTAATACTGGCTACTACCCTAGCC 2086
Query 2116 AAGACTACGCTACGAGCCATGAAT------CTGAGAGCCGAGCCTTCAACACAAGTCACC 2169
|||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2087 AAGACTACGCCACTAGCCATGAATATGAATCTGAGAGCCGAGCCTTCAACACAAGTCACC 2146
Query 2170 GGAACCA 2176
|||||||
Sbjct 2147 GGAACCA 2153
> AT1G49270.1 | Symbols: | Protein kinase superfamily protein
| chr1:18227334-18230227 REVERSE LENGTH=2100
Length=2100
Score = 191 bits (103), Expect = 3e-47
Identities = 450/611 (74%), Gaps = 49/611 (8%)
Strand=Plus/Plus
Query 1158 GGAGAAGGCGGGTTCGGGTGTGTTTACAAGGGCATCCTTTTC-GAGGGAAAGCCAG-TAG 1215
||| ||||||| ||||| | |||| |||| || || ||| | | || ||| || |||
Sbjct 1027 GGACAAGGCGGTTTCGGATATGTTCACAAAGGAAT-CTTGCCAAATGGTAAG-GAGATAG 1084
Query 1216 CGATCAAGCAG-C-TAAAGTC-GGTCAGCGCAG-AAGGATATAGAGAGTTCAAAGCTGAA 1271
|| | ||| || | ||||| | ||| |||| | |||| | ||||||||| | || ||
Sbjct 1085 CGGTGAAG-AGCCTTAAAG-CGGGT-AGCG-GGCAAGGCGAGAGAGAGTTCCAGGCAGAG 1140
Query 1272 GTAGAGATCATAAGCAGAGTGCATCATAGGCACT-TGGTGTCTCTTGTGGGTTATTGCA- 1329
|| |||||||| ||| | || |||||| | || | | |||||||||||||| || ||||
Sbjct 1141 GTGGAGATCATCAGCCGCGTTCATCATCGACA-TCTCGTGTCTCTTGTGGGATACTGCAG 1199
Query 1330 T-CT-CTGAACAACACAGATT-TCTCATCTATGAGTTTGTCCCCAA-CA-ATACTTTGGA 1384
| | | | | ||| || || | | ||||||||||| |||| || | | || || ||
Sbjct 1200 TAATGCGGGAGGACAGAGGTTGT-TGGTCTATGAGTTTCTCCCTAATGACACAC-TT-GA 1256
Query 1385 -TTACCA-TTTGCATGGCAAAAACT--TACCGGTTTTGGAATGGACTAGAAGAGTCAGGA 1440
|| ||| || ||||| |||| | | | || |||| ||| | | ||| ||| ||
Sbjct 1257 GTT-CCACCTT-CATGG-GAAAAGTGGGA-CTGTGATGGATTGGCCAACCAGACTCAAGA 1312
Query 1441 TTGCAATAGGCGCAGCCAAAGGACTTGCTTATCTACATGAAGATTGTCATCCGAAGATTA 1500
|||| |||| |||| ||||| ||||||||||||||||||||||||||||| || || |
Sbjct 1313 TTGCCTTAGGATCAGCAAAAGGTCTTGCTTATCTACATGAAGATTGTCATCCAAAAATCA 1372
Query 1501 TCCATAGGGACATCAAATCGTCAAATATTCTG-TTGGATGATGAA-TTCGAAGCTCA-GG 1557
||||||| ||||| ||| | ||||| ||||| ||| | || || |||||||| || ||
Sbjct 1373 TCCATAGAGACATTAAAGCTTCAAACATTCTCCTTG-ACCAT-AACTTCGAAGC-CAAGG 1429
Query 1558 TTGCAGATTTTGGACTCGC-AAGACTGAACGAT-ACTGCACAGTCACACAT--ATCAACG 1613
||||||||||||| | || ||| || | | || || | | |||||| ||| ||
Sbjct 1430 TTGCAGATTTTGGTTTGGCCAAG-CTCTCCCAAGACAACA-A-T-ACACATGTATCGACT 1485
Query 1614 CGTGTCATGGGCACATTTGGGTATTTAGCACCAGAATATGCGTCAAGCGG-AAAGCTAAC 1672
||||| ||||| ||||| || || ||||| || |||||||| || || || ||| |||||
Sbjct 1486 CGTGTTATGGGAACATTCGGATACTTAGCTCCTGAATATGCATCGAGTGGGAAA-CTAAC 1544
Query 1673 GGATAGATCAGATGTGTTT-TCATTTGGAGTTGTGCTTCTCGAACTCATCACTGGTCGCA 1731
|| | ||||||||| ||| || ||||||||| ||||||| || ||||| || || |||
Sbjct 1545 TGAGAAATCAGATGT-TTTCTCTTTTGGAGTTATGCTTCTTGAGCTCATAACCGGACGCG 1603
Query 1732 AACCTGTTGAT 1742
||| ||||||
Sbjct 1604 GACCGGTTGAT 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109135984830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5