BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919852
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation fact... 939 0.0
AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP... 590 6e-168
AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribo... 558 2e-158
AT1G60480.1 | Symbols: | pseudogene, putative ADP-ribosylation... 248 4e-65
> AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation factor
A1F | chr1:3512795-3514729 REVERSE LENGTH=1043
Length=1043
Score = 939 bits (508), Expect = 0.0
Identities = 561/587 (96%), Gaps = 2/587 (0%)
Strand=Plus/Plus
Query 1 GATCAACGGTTCAACGGACAATGGGGCTTTCATTTGCAAAGCTTTTCAGCCGGCTTTTCG 60
||||||| ||| || ||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 84 GATCAACAGTTAAAAGGAAAATGGGGCTTTCATTTGCAAAGCTTTTTAGCCGGCTTTTTG 143
Query 61 CCAAGAAGGAGATGCGAATCCTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTT 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 144 CCAAGAAGGAGATGCGAATCCTTATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTT 203
Query 121 TGTACAAGCTCAAGCTTGGTGAGATTGTTACCACCATTCCTACCATTGGGTTTAATGTGG 180
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 204 TGTACAAGCTCAAGCTTGGTGAGATTGTCACCACCATTCCCACCATCGGGTTTAATGTGG 263
Query 181 AGACGGTTGAGTACAAAAACATCAGCTTCACCGTCTGGGATGTCGGGGGTCAGGACAAGA 240
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 264 AGACGGTTGAGTACAAGAACATCAGCTTCACGGTTTGGGATGTCGGGGGTCAGGACAAGA 323
Query 241 TCCGTCCCTTGTGGAGGCACTACTTCCAAAACACACAAGGTCTGAT-TTTCGTGGTTGAT 299
|||||||||||||||| ||||||||||||||||| ||||||||||| ||| || ||||||
Sbjct 324 TCCGTCCCTTGTGGAGACACTACTTCCAAAACACTCAAGGTCTGATATTT-GTTGTTGAT 382
Query 300 AGCAATGACAGAGACCGTGTTGTTGAAGCCAGAGATGAACTTCACAGGATGTTGAATGAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 AGCAATGACAGAGACCGTGTTGTTGAAGCCAGAGATGAACTTCACAGGATGTTGAATGAA 442
Query 360 GATGAGCTACGGGATGCAGTATTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCA 419
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 443 GATGAGCTTCGGGATGCAGTATTGCTTGTGTTTGCCAACAAGCAGGATCTTCCAAACGCT 502
Query 420 ATGAATGCTGCTGAGATAACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGG 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 ATGAATGCTGCTGAGATTACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGG 562
Query 480 TACATACAAAGCACATGCGCAACTAGCGGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TACATCCAAAGCACATGCGCAACTAGCGGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT 622
Query 540 TCCAACAACATTGCTAACAAAGCTTGAGGTTATCTCGACCAGAGAGT 586
|||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 623 TCCAACAACATTGCTAGCAAAGCTTGAGGTTATCTCGACCAGATAGT 669
> AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP-binding
family protein | chr1:26563924-26565810 REVERSE LENGTH=918
Length=918
Score = 590 bits (319), Expect = 6e-168
Identities = 470/542 (87%), Gaps = 14/542 (3%)
Strand=Plus/Plus
Query 20 AATGGGGCTTTCA-TTT-GCAAAGCT-TTTCAGCCGGCTTTTCGCCAAGAAGGAGATGCG 76
||||||| || | ||| || ||||| ||| ||| ||||||| |||||||||||||||||
Sbjct 134 AATGGGG--TTGAGTTTCGCCAAGCTGTTT-AGCAGGCTTTTTGCCAAGAAGGAGATGCG 190
Query 77 AATCCTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCT 136
||| || ||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 191 AATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACAATCTTGTACAAGCTCAAGCT 250
Query 137 TGGTGAGATTGTTACCACCATTCCTACCATTGGGTTT-AATGTGGAGACGGTTGAGTACA 195
|| |||||||| |||||||| ||||| ||| ||||| |||||||| || || || ||||
Sbjct 251 CGGAGAGATTGTCACCACCATCCCTACTATT-GGTTTCAATGTGGAAACTGTGGAATACA 309
Query 196 AAAACATCAGCTTCACCGTCTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGA 255
| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 AGAACATTAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGA 369
Query 256 GGCACTACTTCCAAAACACACAAGGTCTGAT-TTTCGTGGTTGATAGCAATGACAGAGAC 314
| ||||||||||| ||||| |||||||| || ||| || |||||||||||||||||||||
Sbjct 370 GACACTACTTCCAGAACACTCAAGGTCTAATCTTT-GTTGTTGATAGCAATGACAGAGAC 428
Query 315 CGTGTTGTTGAAGC-CAGAGATGAACTTCACAGGATGTTGAATGAAGATGAGCTACGGGA 373
| |||||||| || | |||||||||| ||||||||| ||||||| || ||||| || ||
Sbjct 429 AGAGTTGTTGAGGCTC-GAGATGAACTCCACAGGATGCTGAATGAGGACGAGCTGCGTGA 487
Query 374 TGCAGTATTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGA 433
||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 488 TGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGCTGA 547
Query 434 GATAACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATACAAAGCAC 493
|| || |||||||||||||||||||| ||||| || || || ||||| || || |||||
Sbjct 548 AATCACAGATAAGCTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGAGCAC 607
Query 494 ATGCGCAACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTTTCCAACAACATTG 552
||| || ||| | ||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 608 ATGTGCCACTT-CAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCG 666
Query 553 CT 554
||
Sbjct 667 CT 668
> AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribosylation
factor 1 | chr1:8336683-8338672 FORWARD LENGTH=982
Length=982
Score = 558 bits (302), Expect = 2e-158
Identities = 460/536 (86%), Gaps = 11/536 (2%)
Strand=Plus/Plus
Query 24 GGGCTT-TCATTTGCAAAGCTTTTCAGCCGGCTTTTCGCCAAGAAGGAGATGCGAATCCT 82
||| || ||||| || |||||||| ||| ||||||| ||||||||||||||| |||| ||
Sbjct 140 GGGATTGTCATTCGCCAAGCTTTTTAGCAGGCTTTTTGCCAAGAAGGAGATGAGAATTCT 199
Query 83 TATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGTGA 142
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 200 GATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGA 259
Query 143 GATTGTTACCACCATTCCTACCATTGGGTTTAATGTGGAGACGGTTGAGTACAAAAACAT 202
|||||| ||||||||||| || |||||||| ||||||||||| || |||||||| |||||
Sbjct 260 GATTGTAACCACCATTCCCACTATTGGGTTCAATGTGGAGACTGTGGAGTACAAGAACAT 319
Query 203 CAGCTTCACCGTCTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGCACTA 262
||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 320 CAGTTTCACAGTGTGGGATGTCGGCGGTCAGGATAAGATCCGTCCCTTGTGGAGGCATTA 379
Query 263 CTTCCAAAACACACAAGGTCTGAT-TTTCGTGGTTGATAGCAATGACAGAGACCGTGTTG 321
|||||| ||||| |||||||| || ||| ||||| || ||||||||||||||||||||||
Sbjct 380 CTTCCAGAACACCCAAGGTCTTATCTTT-GTGGTGGACAGCAATGACAGAGACCGTGTTG 438
Query 322 TTGAAGCCAGAGATGAACTT-CACAGGATGTTGAATGAAGATGAGCTACGGGATGCAGTA 380
|||| || ||||||||| || ||| | ||||||||||| || ||||| || ||||| ||
Sbjct 439 TTGAGGCTAGAGATGAA-TTGCACCGAATGTTGAATGAGGACGAGCTGCGTGATGCTGT- 496
Query 381 T-TGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGAGATAAC 439
| |||| || ||||| |||||||| ||||| |||||||| |||||||| |||||||| ||
Sbjct 497 TCTGCTCGTATTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAGATCAC 556
Query 440 TGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATACAAAGCACATGCGC 499
||||||||||| || ||||| ||||| || || ||||||||||| || |||||||| ||
Sbjct 557 GGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGC 616
Query 500 AACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT-TCCAACAACATTGC 553
||| | || || ||||| || |||||||| || ||| || ||||||||||||||
Sbjct 617 CACTT-CAGGCGAGGGGCTTTACGAAGGTCTTGACTGG-TTGTCCAACAACATTGC 670
> AT1G60480.1 | Symbols: | pseudogene, putative ADP-ribosylation
factor, similar to ADP-ribosylation factor GI:166586 from
(Arabidopsis thaliana); blastp match of 100% identity and 7.4e-53
P-value to GP|17154685|emb|CAD12855.1||AJ421017 ADP-ribosylation
factor {Gossypium hirsutum} | chr1:22284122-22285076
REVERSE LENGTH=955
Length=955
Score = 248 bits (134), Expect = 4e-65
Identities = 144/149 (97%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 21 ATGGGGCTTTCATTTGCAAAGCTTTTCAGCCGGCTTTTCGCCAAGAAGGAGATGCGAATC 80
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGCTTTCATTTGCAAAGCTTTTCAGCAGGCTTTTCGCCAAGAAGGAGATGCGCATC 60
Query 81 CTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGT 120
Query 141 GAGATTGTTACCACCATTCCTACCATTGG 169
|||||||| |||||||| || ||||||||
Sbjct 121 GAGATTGTCACCACCATCCCCACCATTGG 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5